NAMESPACE

# Generated by roxygen2: do not edit by hand

export(agrestiCoullCI)
export(bootstrapCompartments)
export(cleanAssayCols)
export(cleanAssayRows)
export(condenseRE)
export(condenseSE)
export(estRMT)
export(extractOpenClosed)
export(fexpit)
export(filterCompartments)
export(filterOpenSea)
export(fisherZ)
export(fixCompartments)
export(flogit)
export(getABSignal)
export(getATACABsignal)
export(getArrayABsignal)
export(getAssayNames)
export(getBinMatrix)
export(getChrs)
export(getCorMatrix)
export(getDenoisedCorMatrix)
export(getDomainInflections)
export(getGenome)
export(getGlobalMeans)
export(getMatrixBlocks)
export(getOpenSeas)
export(getSVD)
export(getSeqLengths)
export(getShrinkageTargets)
export(hdf5TFIDF)
export(ifisherZ)
export(importBigWig)
export(imputeKNN)
export(meanSmoother)
export(plotAB)
export(plotCorMatrix)
export(precomputeBootstrapMeans)
export(preprocessArrays)
export(removeEmptyBoots)
export(scCompartments)
export(shrinkBins)
export(sparseToDenseMatrix)
export(summarizeBootstraps)
export(transformTFIDF)
import(DelayedArray)
import(DelayedMatrixStats)
import(GenomicRanges)
import(HDF5Array)
import(Matrix)
import(RaggedExperiment)
import(SummarizedExperiment)
import(rtracklayer)
importFrom(BiocSingular,IrlbaParam)
importFrom(BiocSingular,runSVD)
importFrom(GenomeInfoDb,"seqlevelsStyle<-")
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,keepStandardChromosomes)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,par)
importFrom(methods,as)
importFrom(methods,is)
importFrom(parallel,mclapply)
importFrom(rlang,.data)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,median)
importFrom(stats,optim)
importFrom(stats,sd)
importFrom(stats,weighted.mean)
importFrom(utils,data)