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165 | 165 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc]
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166 | 166 | \item Developer friendly libraries for Python and Java
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167 | 167 | \item Fully functional graphical editor for Linux, Windows, and MacOS~X
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168 |
| -\item Support for the latest odML specification |
| 168 | +%\item Support for the latest odML specification |
169 | 169 | \end{itemize}
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170 | 170 |
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171 | 171 | \vspace{0.5em}
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189 | 189 |
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190 | 190 | LFPy provides:
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191 | 191 | \begin{itemize}[nolistsep, topsep=0em, leftmargin=1pc]
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192 |
| -\item A forward modeling scheme for calculating extracellular potentials from compartmental membrane currents in an infinite homogeneous linear extracellular medium. |
193 |
| -\item Simple to use Python-classes for setting up cells, synapses and recording electrodes. |
194 |
| -\item Easy to use scripting capabilities thanks to NEURON and the Python programming environment. |
195 |
| -\item Functionality to employ or specify biophysically detailed model neurons, add a stimulus, and perform a simultaneous simulation of the model cell responses and extracellular potentials. |
196 |
| -\item Support for common formats for reconstructed neuronal morphologies, allowing use of publicly available 3D-reconstructions (e.g., \url{http://www.neuromorpho.org}). |
| 192 | +\item A forward modeling scheme for calculating extracellular |
| 193 | + potentials from compartmental membrane currents in an infinite |
| 194 | + homogeneous linear extracellular medium |
| 195 | +\item Python-classes for setting up cells, synapses and recording |
| 196 | + electrodes |
| 197 | +\item Scripting capabilities thanks to NEURON and the |
| 198 | + Python programming environment |
| 199 | +\item Simultaneous simulation of the model cell responses and |
| 200 | + extracellular potentials based on a biophysically detailed neuronal |
| 201 | + model |
| 202 | +\item Support for common formats for reconstructed neuronal |
| 203 | + morphologies, allowing use of publicly available 3D-reconstructions |
| 204 | + (\emph{e.g.}, \url{http://www.neuromorpho.org}). |
197 | 205 | \end{itemize}
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198 | 206 |
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199 | 207 |
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214 | 222 | MNE is a software package for processing magnetoencephalography (MEG) and electroencephalography (EEG) data.
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215 | 223 | (\url{http://www.martinos.org/mne})
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216 | 224 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc]
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217 |
| -\item Includes MEG and EEG preprocessing tools |
218 |
| -\item Includes various data conditioning and data conversion utilities. |
| 225 | +%\item MEG and EEG preprocessing tools |
| 226 | +\item Data conditioning and data conversion utilities |
219 | 227 | \item Interactive and batch-mode modules for the forward and inverse calculations
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220 |
| -\item Computes cortically-constrained source estimates |
221 |
| -\item Computes associated dynamic statistical parametric maps, optionally constrained by fMRI |
222 |
| -\item Includes frequency-domain and time-frequency analyses and non-parametric statistics |
223 |
| -\item Includes multi-variate statistics (decoding) |
| 228 | +\item Cortically-constrained source estimates |
| 229 | +\item Associated dynamic statistical parametric maps, optionally constrained by fMRI |
| 230 | +\item Frequency-domain and time-frequency analyses, non-parametric |
| 231 | + statistics, multivariate decoding |
224 | 232 | \end{itemize}
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225 | 233 |
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226 | 234 | \vspace{1em}
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227 | 235 | \includegraphics[width=\columnwidth]{mne_screenshot.pdf}
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228 | 236 | % Selected set of citations, Here is an example:
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229 |
| -\ndcite{A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, MNE software for processing MEG and EEG data, NeuroImage, Volume 86, 1 February 2014, Pages 446-460, ISSN 1053-8119, http://dx.doi.org/10.1016/j.neuroimage.2013.10.027} |
230 |
| -\ndcite{A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, R. Goj, M. Jas, T. Brooks, L. Parkkonen, M. Hämäläinen, MEG and EEG data analysis with MNE-Python, Frontiers in Neuroscience, Volume 7, 2013, ISSN 1662-453X, http://dx.doi.org/10.3389/fnins.2013.00267} |
| 237 | +\ndcite{A. Gramfort, \emph{et.~al.} |
| 238 | +% M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, |
| 239 | +MNE software for processing MEG and EEG data, NeuroImage, Volume 86, 1 February 2014, Pages 446-460, ISSN 1053-8119, http://dx.doi.org/10.1016/j.neuroimage.2013.10.027} |
| 240 | +% \ndcite{A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, R. Goj, M. Jas, T. Brooks, L. Parkkonen, M. Hämäläinen, MEG and EEG data analysis with MNE-Python, Frontiers in Neuroscience, Volume 7, 2013, ISSN 1662-453X, http://dx.doi.org/10.3389/fnins.2013.00267} |
231 | 241 |
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232 | 242 |
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233 | 243 | %________________________Stimfit____________________________________________
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320 | 330 | \item Live camera viewing for patching and online analysis of calcium imaging
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321 | 331 | \item Modular and scalable design -- easy to expand support for new hardware and experiments
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322 | 332 | \item Integrated data manager for hierarchical data storage with annotations and other metadata
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323 |
| -\item Includes extensive set of analysis tools |
| 333 | +%\item Includes extensive set of analysis tools |
324 | 334 | \end{itemize}
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325 | 335 |
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326 | 336 | \vspace{1em}
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