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<div id="projectname">PISM, A Parallel Ice Sheet Model<span id="projectnumber"> 2.2.2-d6b3a29ca committed by Constantine Khrulev on 2025-03-28</span>
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<a href="Array__impl_8hh.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">/* Copyright (C) 2020, 2021, 2022, 2023, 2024 PISM Authors</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment"> *</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment"> * This file is part of PISM.</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment"> *</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment"> * PISM is free software; you can redistribute it and/or modify it under the</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment"> * terms of the GNU General Public License as published by the Free Software</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment"> * Foundation; either version 3 of the License, or (at your option) any later</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment"> * version.</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment"> *</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment"> * PISM is distributed in the hope that it will be useful, but WITHOUT ANY</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment"> * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment"> * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment"> * details.</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment"> *</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment"> * You should have received a copy of the GNU General Public License</span></div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="comment"> * along with PISM; if not, write to the Free Software</span></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="comment"> * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA</span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="comment"> */</span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="preprocessor">#ifndef PISM_ARRAY_IMPL_HH</span></div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#define PISM_ARRAY_IMPL_HH</span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> </div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include <map></span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="preprocessor">#include <memory></span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="preprocessor">#include <string></span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span><span class="preprocessor">#include <vector></span></div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> </div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span><span class="preprocessor">#include "pism/util/array/Array.hh"</span></div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> </div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span><span class="preprocessor">#include <gsl/gsl_interp.h></span></div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span><span class="preprocessor">#include "pism/util/petscwrappers/Vec.hh"</span></div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span><span class="preprocessor">#include "pism/util/Interpolation1D.hh"</span></div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span><span class="preprocessor">#include "pism/util/VariableMetadata.hh"</span></div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacepism.html">pism</a> {</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span><span class="keyword">namespace </span>array {</div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="foldopen" id="foldopen00038" data-start="{" data-end="};">
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl.html"> 38</a></span><span class="keyword">struct </span><a class="code hl_struct" href="structpism_1_1array_1_1Array_1_1Impl.html">Array::Impl</a> {</div>
<div class="foldopen" id="foldopen00039" data-start="{" data-end="}">
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a49532a89d31d97a9bf2eb775a23bac0a.html#a49532a89d31d97a9bf2eb775a23bac0a"> 39</a></span> <a class="code hl_function" href="structpism_1_1array_1_1Array_1_1Impl_a49532a89d31d97a9bf2eb775a23bac0a.html#a49532a89d31d97a9bf2eb775a23bac0a">Impl</a>() {</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_ab55199ee152175b7c5cd213f47f7b82d.html#ab55199ee152175b7c5cd213f47f7b82d">access_counter</a> = 0;</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_aed733ad520c76599d407b7059831e49a.html#aed733ad520c76599d407b7059831e49a">da</a>.reset();</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a961bf463efac459983019621ea7594d1.html#a961bf463efac459983019621ea7594d1">da_stencil_width</a> = 1;</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_afed8669b7b65408241944b89f5d5eaf8.html#afed8669b7b65408241944b89f5d5eaf8">dof</a> = 1;</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a06bf21dbba62d30c451037e5de5a5f97.html#a06bf21dbba62d30c451037e5de5a5f97">begin_access_use_dof</a> = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> </div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a168f31ddc8404eb3ddb3a38a55aee3b7.html#a168f31ddc8404eb3ddb3a38a55aee3b7">ghosted</a> = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a71a1ccaa803f38c6edd4c027c031339a.html#a71a1ccaa803f38c6edd4c027c031339a">report_range</a> = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_ad071bf93059f137225d182dfdd6a7e2f.html#ad071bf93059f137225d182dfdd6a7e2f">name</a> = <span class="stringliteral">"uninitialized variable"</span>;</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_aec81354aaf53e5608f89116c340263da.html#aec81354aaf53e5608f89116c340263da">zlevels</a> = {0.0};</div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a100d6ba747878ecf1aa09542976970b1.html#a100d6ba747878ecf1aa09542976970b1">state_counter</a> = 0;</div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a3e0a8f5b2176e8aaa858ef6e169c5507.html#a3e0a8f5b2176e8aaa858ef6e169c5507">interpolation_type</a> = <a class="code hl_enumvalue" href="namespacepism_a3415cf6a7a4530c4e489feebe6365e03.html#a3415cf6a7a4530c4e489feebe6365e03aa03926dd636ce1d977b1a8a9ed608c85">LINEAR</a>;</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> </div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a90edba9f54e9a08982973dd017941662.html#a90edba9f54e9a08982973dd017941662">bsearch_accel</a> = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> }<span class="comment"></span></div>
</div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span><span class="comment"> //! If true, report range when regridding.</span></div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a71a1ccaa803f38c6edd4c027c031339a.html#a71a1ccaa803f38c6edd4c027c031339a"> 62</a></span><span class="comment"></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a71a1ccaa803f38c6edd4c027c031339a.html#a71a1ccaa803f38c6edd4c027c031339a">report_range</a>;</div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span><span class="comment"></span> </div>
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span><span class="comment"> //! The array itself</span></div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span><span class="comment"> //!</span></div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span><span class="comment"> //! Note: do not access this directly (via `m_impl->v`). Use `vec()` instead.</span></div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_ae6675398609d961132a8e6948b3d2777.html#ae6675398609d961132a8e6948b3d2777"> 67</a></span><span class="comment"></span> <a class="code hl_class" href="classpism_1_1petsc_1_1Vec.html">petsc::Vec</a> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_ae6675398609d961132a8e6948b3d2777.html#ae6675398609d961132a8e6948b3d2777">v</a>;</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span><span class="comment"></span> </div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span><span class="comment"> //! Name of the field. In general this is *not* the name of the corresponding NetCDF</span></div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span><span class="comment"> //! variable.</span></div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_ad071bf93059f137225d182dfdd6a7e2f.html#ad071bf93059f137225d182dfdd6a7e2f"> 71</a></span><span class="comment"></span> std::string <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_ad071bf93059f137225d182dfdd6a7e2f.html#ad071bf93059f137225d182dfdd6a7e2f">name</a>;</div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span><span class="comment"></span> </div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span><span class="comment"> //! Metadata (NetCDF variable attributes)</span></div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_aa4a72e5a1f1c7602b0a3abfaa970ab59.html#aa4a72e5a1f1c7602b0a3abfaa970ab59"> 74</a></span><span class="comment"></span> std::vector<SpatialVariableMetadata> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_aa4a72e5a1f1c7602b0a3abfaa970ab59.html#aa4a72e5a1f1c7602b0a3abfaa970ab59">metadata</a>;</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span><span class="comment"></span> </div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span><span class="comment"> //! The computational grid</span></div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a295d8d59d99979427598a947439a2949.html#a295d8d59d99979427598a947439a2949"> 77</a></span><span class="comment"></span> std::shared_ptr<const Grid> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a295d8d59d99979427598a947439a2949.html#a295d8d59d99979427598a947439a2949">grid</a>;</div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span><span class="comment"></span> </div>
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span><span class="comment"> //! number of "degrees of freedom" per grid point</span></div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_afed8669b7b65408241944b89f5d5eaf8.html#afed8669b7b65408241944b89f5d5eaf8"> 80</a></span><span class="comment"></span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_afed8669b7b65408241944b89f5d5eaf8.html#afed8669b7b65408241944b89f5d5eaf8">dof</a>;</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span><span class="comment"></span> </div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span><span class="comment"> //! stencil width supported by the DA</span></div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a961bf463efac459983019621ea7594d1.html#a961bf463efac459983019621ea7594d1"> 83</a></span><span class="comment"></span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a961bf463efac459983019621ea7594d1.html#a961bf463efac459983019621ea7594d1">da_stencil_width</a>;</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span><span class="comment"></span> </div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span><span class="comment"> //! true if this Array is ghosted</span></div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a168f31ddc8404eb3ddb3a38a55aee3b7.html#a168f31ddc8404eb3ddb3a38a55aee3b7"> 86</a></span><span class="comment"></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a168f31ddc8404eb3ddb3a38a55aee3b7.html#a168f31ddc8404eb3ddb3a38a55aee3b7">ghosted</a>;</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span><span class="comment"></span> </div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span><span class="comment"> //! distributed mesh manager (DM)</span></div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span><span class="comment"> //!</span></div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span><span class="comment"> //! Note: do not access this directly (via `m_impl->da`). Use `dm()` instead.</span></div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_aed733ad520c76599d407b7059831e49a.html#aed733ad520c76599d407b7059831e49a"> 91</a></span><span class="comment"></span> std::shared_ptr<petsc::DM> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_aed733ad520c76599d407b7059831e49a.html#aed733ad520c76599d407b7059831e49a">da</a>;</div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span><span class="comment"></span> </div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span><span class="comment"> //! If true, use DMDAVecGetArrayDOF() in begin_access()</span></div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a06bf21dbba62d30c451037e5de5a5f97.html#a06bf21dbba62d30c451037e5de5a5f97"> 94</a></span><span class="comment"></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a06bf21dbba62d30c451037e5de5a5f97.html#a06bf21dbba62d30c451037e5de5a5f97">begin_access_use_dof</a>;</div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span><span class="comment"></span> </div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span><span class="comment"> //! Map plane viewers. It is a map because a temporary Array can be used to view</span></div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span><span class="comment"> //! different quantities</span></div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a69eee55ddbbbc6b3d66aa69a7e532e37.html#a69eee55ddbbbc6b3d66aa69a7e532e37"> 98</a></span><span class="comment"></span> std::map<std::string,std::shared_ptr<petsc::Viewer> > <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a69eee55ddbbbc6b3d66aa69a7e532e37.html#a69eee55ddbbbc6b3d66aa69a7e532e37">map_viewers</a>;</div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> </div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> <span class="comment">// used in begin_access() and end_access()</span></div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_ab55199ee152175b7c5cd213f47f7b82d.html#ab55199ee152175b7c5cd213f47f7b82d"> 101</a></span> <span class="keywordtype">int</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_ab55199ee152175b7c5cd213f47f7b82d.html#ab55199ee152175b7c5cd213f47f7b82d">access_counter</a>;</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span><span class="comment"></span> </div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span><span class="comment"> //! Internal array::Array "revision number"</span></div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a100d6ba747878ecf1aa09542976970b1.html#a100d6ba747878ecf1aa09542976970b1"> 104</a></span><span class="comment"></span> <span class="keywordtype">int</span> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a100d6ba747878ecf1aa09542976970b1.html#a100d6ba747878ecf1aa09542976970b1">state_counter</a>;</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> <span class="comment">// 2D Interpolation type (used by regrid())</span></div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a3e0a8f5b2176e8aaa858ef6e169c5507.html#a3e0a8f5b2176e8aaa858ef6e169c5507"> 107</a></span> <a class="code hl_enumeration" href="namespacepism_a3415cf6a7a4530c4e489feebe6365e03.html#a3415cf6a7a4530c4e489feebe6365e03">InterpolationType</a> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a3e0a8f5b2176e8aaa858ef6e169c5507.html#a3e0a8f5b2176e8aaa858ef6e169c5507">interpolation_type</a>;</div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span><span class="comment"></span> </div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span><span class="comment"> //! Vertical levels (for 3D fields)</span></div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_aec81354aaf53e5608f89116c340263da.html#aec81354aaf53e5608f89116c340263da"> 110</a></span><span class="comment"></span> std::vector<double> <a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_aec81354aaf53e5608f89116c340263da.html#aec81354aaf53e5608f89116c340263da">zlevels</a>;</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> <span class="comment">// binary search accelerator (used for interpolation in a column in 3D fields)</span></div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"><a class="line" href="structpism_1_1array_1_1Array_1_1Impl_a90edba9f54e9a08982973dd017941662.html#a90edba9f54e9a08982973dd017941662"> 113</a></span> gsl_interp_accel *<a class="code hl_variable" href="structpism_1_1array_1_1Array_1_1Impl_a90edba9f54e9a08982973dd017941662.html#a90edba9f54e9a08982973dd017941662">bsearch_accel</a>;</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span>};</div>
</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span><span class="keywordtype">void</span> <a class="code hl_function" href="namespacepism_1_1array_a79ae8188b20d8242ce8326fc22d8699b.html#a79ae8188b20d8242ce8326fc22d8699b">global_to_local</a>(<a class="code hl_class" href="classpism_1_1petsc_1_1DM.html">petsc::DM</a> &dm, Vec source, Vec destination);</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> </div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span><span class="comment">// set default value or stop with an error message (during regridding)</span></div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span><span class="keywordtype">void</span> <a class="code hl_function" href="namespacepism_1_1array_aa4c02b452ad1c152553c183488641c43.html#aa4c02b452ad1c152553c183488641c43">set_default_value_or_stop</a>(<span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1VariableMetadata.html">VariableMetadata</a> &variable, <a class="code hl_class" href="classpism_1_1io_1_1Default.html">io::Default</a> default_value,</div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1Logger.html">Logger</a> &log, Vec output);</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> </div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span>} <span class="comment">// end of namespace array</span></div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span>} <span class="comment">// end of namespace pism</span></div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> </div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span><span class="preprocessor">#endif </span><span class="comment">/* PISM_ARRAY_IMPL_HH */</span><span class="preprocessor"></span></div>
<div class="ttc" id="aclasspism_1_1Logger_html"><div class="ttname"><a href="classpism_1_1Logger.html">pism::Logger</a></div><div class="ttdoc">A basic logging class.</div><div class="ttdef"><b>Definition</b> <a href="Logger_8hh_source.html#l00040">Logger.hh:40</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_html"><div class="ttname"><a href="classpism_1_1VariableMetadata.html">pism::VariableMetadata</a></div><div class="ttdef"><b>Definition</b> <a href="VariableMetadata_8hh_source.html#l00099">VariableMetadata.hh:99</a></div></div>
<div class="ttc" id="aclasspism_1_1io_1_1Default_html"><div class="ttname"><a href="classpism_1_1io_1_1Default.html">pism::io::Default</a></div><div class="ttdef"><b>Definition</b> <a href="IO__Flags_8hh_source.html#l00087">IO_Flags.hh:87</a></div></div>
<div class="ttc" id="aclasspism_1_1petsc_1_1DM_html"><div class="ttname"><a href="classpism_1_1petsc_1_1DM.html">pism::petsc::DM</a></div><div class="ttdef"><b>Definition</b> <a href="DM_8hh_source.html#l00037">DM.hh:37</a></div></div>
<div class="ttc" id="aclasspism_1_1petsc_1_1Vec_html"><div class="ttname"><a href="classpism_1_1petsc_1_1Vec.html">pism::petsc::Vec</a></div><div class="ttdef"><b>Definition</b> <a href="Vec_8hh_source.html#l00036">Vec.hh:36</a></div></div>
<div class="ttc" id="anamespacepism_1_1array_a79ae8188b20d8242ce8326fc22d8699b_html_a79ae8188b20d8242ce8326fc22d8699b"><div class="ttname"><a href="namespacepism_1_1array_a79ae8188b20d8242ce8326fc22d8699b.html#a79ae8188b20d8242ce8326fc22d8699b">pism::array::global_to_local</a></div><div class="ttdeci">void global_to_local(petsc::DM &dm, Vec source, Vec destination)</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00053">Array.cc:53</a></div></div>
<div class="ttc" id="anamespacepism_1_1array_aa4c02b452ad1c152553c183488641c43_html_aa4c02b452ad1c152553c183488641c43"><div class="ttname"><a href="namespacepism_1_1array_aa4c02b452ad1c152553c183488641c43.html#aa4c02b452ad1c152553c183488641c43">pism::array::set_default_value_or_stop</a></div><div class="ttdeci">void set_default_value_or_stop(const VariableMetadata &variable, io::Default default_value, const Logger &log, Vec output)</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00358">Array.cc:358</a></div></div>
<div class="ttc" id="anamespacepism_a3415cf6a7a4530c4e489feebe6365e03_html_a3415cf6a7a4530c4e489feebe6365e03"><div class="ttname"><a href="namespacepism_a3415cf6a7a4530c4e489feebe6365e03.html#a3415cf6a7a4530c4e489feebe6365e03">pism::InterpolationType</a></div><div class="ttdeci">InterpolationType</div><div class="ttdef"><b>Definition</b> <a href="Interpolation1D_8hh_source.html#l00029">Interpolation1D.hh:29</a></div></div>
<div class="ttc" id="anamespacepism_a3415cf6a7a4530c4e489feebe6365e03_html_a3415cf6a7a4530c4e489feebe6365e03aa03926dd636ce1d977b1a8a9ed608c85"><div class="ttname"><a href="namespacepism_a3415cf6a7a4530c4e489feebe6365e03.html#a3415cf6a7a4530c4e489feebe6365e03aa03926dd636ce1d977b1a8a9ed608c85">pism::LINEAR</a></div><div class="ttdeci">@ LINEAR</div><div class="ttdef"><b>Definition</b> <a href="Interpolation1D_8hh_source.html#l00029">Interpolation1D.hh:29</a></div></div>
<div class="ttc" id="anamespacepism_html"><div class="ttname"><a href="namespacepism.html">pism</a></div><div class="ttdef"><b>Definition</b> <a href="AgeColumnSystem_8cc_source.html#l00023">AgeColumnSystem.cc:23</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a06bf21dbba62d30c451037e5de5a5f97_html_a06bf21dbba62d30c451037e5de5a5f97"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a06bf21dbba62d30c451037e5de5a5f97.html#a06bf21dbba62d30c451037e5de5a5f97">pism::array::Array::Impl::begin_access_use_dof</a></div><div class="ttdeci">bool begin_access_use_dof</div><div class="ttdoc">If true, use DMDAVecGetArrayDOF() in begin_access()</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00094">Array_impl.hh:94</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a100d6ba747878ecf1aa09542976970b1_html_a100d6ba747878ecf1aa09542976970b1"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a100d6ba747878ecf1aa09542976970b1.html#a100d6ba747878ecf1aa09542976970b1">pism::array::Array::Impl::state_counter</a></div><div class="ttdeci">int state_counter</div><div class="ttdoc">Internal array::Array "revision number".</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00104">Array_impl.hh:104</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a168f31ddc8404eb3ddb3a38a55aee3b7_html_a168f31ddc8404eb3ddb3a38a55aee3b7"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a168f31ddc8404eb3ddb3a38a55aee3b7.html#a168f31ddc8404eb3ddb3a38a55aee3b7">pism::array::Array::Impl::ghosted</a></div><div class="ttdeci">bool ghosted</div><div class="ttdoc">true if this Array is ghosted</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00086">Array_impl.hh:86</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a295d8d59d99979427598a947439a2949_html_a295d8d59d99979427598a947439a2949"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a295d8d59d99979427598a947439a2949.html#a295d8d59d99979427598a947439a2949">pism::array::Array::Impl::grid</a></div><div class="ttdeci">std::shared_ptr< const Grid > grid</div><div class="ttdoc">The computational grid.</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00077">Array_impl.hh:77</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a3e0a8f5b2176e8aaa858ef6e169c5507_html_a3e0a8f5b2176e8aaa858ef6e169c5507"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a3e0a8f5b2176e8aaa858ef6e169c5507.html#a3e0a8f5b2176e8aaa858ef6e169c5507">pism::array::Array::Impl::interpolation_type</a></div><div class="ttdeci">InterpolationType interpolation_type</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00107">Array_impl.hh:107</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a49532a89d31d97a9bf2eb775a23bac0a_html_a49532a89d31d97a9bf2eb775a23bac0a"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a49532a89d31d97a9bf2eb775a23bac0a.html#a49532a89d31d97a9bf2eb775a23bac0a">pism::array::Array::Impl::Impl</a></div><div class="ttdeci">Impl()</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00039">Array_impl.hh:39</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a69eee55ddbbbc6b3d66aa69a7e532e37_html_a69eee55ddbbbc6b3d66aa69a7e532e37"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a69eee55ddbbbc6b3d66aa69a7e532e37.html#a69eee55ddbbbc6b3d66aa69a7e532e37">pism::array::Array::Impl::map_viewers</a></div><div class="ttdeci">std::map< std::string, std::shared_ptr< petsc::Viewer > > map_viewers</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00098">Array_impl.hh:98</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a71a1ccaa803f38c6edd4c027c031339a_html_a71a1ccaa803f38c6edd4c027c031339a"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a71a1ccaa803f38c6edd4c027c031339a.html#a71a1ccaa803f38c6edd4c027c031339a">pism::array::Array::Impl::report_range</a></div><div class="ttdeci">bool report_range</div><div class="ttdoc">If true, report range when regridding.</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00062">Array_impl.hh:62</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a90edba9f54e9a08982973dd017941662_html_a90edba9f54e9a08982973dd017941662"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a90edba9f54e9a08982973dd017941662.html#a90edba9f54e9a08982973dd017941662">pism::array::Array::Impl::bsearch_accel</a></div><div class="ttdeci">gsl_interp_accel * bsearch_accel</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00113">Array_impl.hh:113</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_a961bf463efac459983019621ea7594d1_html_a961bf463efac459983019621ea7594d1"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_a961bf463efac459983019621ea7594d1.html#a961bf463efac459983019621ea7594d1">pism::array::Array::Impl::da_stencil_width</a></div><div class="ttdeci">unsigned int da_stencil_width</div><div class="ttdoc">stencil width supported by the DA</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00083">Array_impl.hh:83</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_aa4a72e5a1f1c7602b0a3abfaa970ab59_html_aa4a72e5a1f1c7602b0a3abfaa970ab59"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_aa4a72e5a1f1c7602b0a3abfaa970ab59.html#aa4a72e5a1f1c7602b0a3abfaa970ab59">pism::array::Array::Impl::metadata</a></div><div class="ttdeci">std::vector< SpatialVariableMetadata > metadata</div><div class="ttdoc">Metadata (NetCDF variable attributes)</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00074">Array_impl.hh:74</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_ab55199ee152175b7c5cd213f47f7b82d_html_ab55199ee152175b7c5cd213f47f7b82d"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_ab55199ee152175b7c5cd213f47f7b82d.html#ab55199ee152175b7c5cd213f47f7b82d">pism::array::Array::Impl::access_counter</a></div><div class="ttdeci">int access_counter</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00101">Array_impl.hh:101</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_ad071bf93059f137225d182dfdd6a7e2f_html_ad071bf93059f137225d182dfdd6a7e2f"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_ad071bf93059f137225d182dfdd6a7e2f.html#ad071bf93059f137225d182dfdd6a7e2f">pism::array::Array::Impl::name</a></div><div class="ttdeci">std::string name</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00071">Array_impl.hh:71</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_ae6675398609d961132a8e6948b3d2777_html_ae6675398609d961132a8e6948b3d2777"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_ae6675398609d961132a8e6948b3d2777.html#ae6675398609d961132a8e6948b3d2777">pism::array::Array::Impl::v</a></div><div class="ttdeci">petsc::Vec v</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00067">Array_impl.hh:67</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_aec81354aaf53e5608f89116c340263da_html_aec81354aaf53e5608f89116c340263da"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_aec81354aaf53e5608f89116c340263da.html#aec81354aaf53e5608f89116c340263da">pism::array::Array::Impl::zlevels</a></div><div class="ttdeci">std::vector< double > zlevels</div><div class="ttdoc">Vertical levels (for 3D fields)</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00110">Array_impl.hh:110</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_aed733ad520c76599d407b7059831e49a_html_aed733ad520c76599d407b7059831e49a"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_aed733ad520c76599d407b7059831e49a.html#aed733ad520c76599d407b7059831e49a">pism::array::Array::Impl::da</a></div><div class="ttdeci">std::shared_ptr< petsc::DM > da</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00091">Array_impl.hh:91</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_afed8669b7b65408241944b89f5d5eaf8_html_afed8669b7b65408241944b89f5d5eaf8"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl_afed8669b7b65408241944b89f5d5eaf8.html#afed8669b7b65408241944b89f5d5eaf8">pism::array::Array::Impl::dof</a></div><div class="ttdeci">unsigned int dof</div><div class="ttdoc">number of "degrees of freedom" per grid point</div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00080">Array_impl.hh:80</a></div></div>
<div class="ttc" id="astructpism_1_1array_1_1Array_1_1Impl_html"><div class="ttname"><a href="structpism_1_1array_1_1Array_1_1Impl.html">pism::array::Array::Impl</a></div><div class="ttdef"><b>Definition</b> <a href="Array__impl_8hh_source.html#l00038">Array_impl.hh:38</a></div></div>
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