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<div id="projectname">PISM, A Parallel Ice Sheet Model<span id="projectnumber"> 2.2.2-d6b3a29ca committed by Constantine Khrulev on 2025-03-28</span>
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<a href="BedThermalUnit_8cc.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">// Copyright (C) 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2023, 2024 Ed Bueler and Constantine Khroulev</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment">//</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment">// This file is part of PISM.</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment">//</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment">// PISM is free software; you can redistribute it and/or modify it under the</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment">// terms of the GNU General Public License as published by the Free Software</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment">// Foundation; either version 3 of the License, or (at your option) any later</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment">// version.</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment">//</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment">// PISM is distributed in the hope that it will be useful, but WITHOUT ANY</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment">// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment">// FOR A PARTICULAR PURPOSE. See the GNU General Public License for more</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment">// details.</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment">//</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment">// You should have received a copy of the GNU General Public License</span></div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="comment">// along with PISM; if not, write to the Free Software</span></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="comment">// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA</span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> </div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="preprocessor">#include <memory></span></div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include "pism/energy/BedThermalUnit.hh"</span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include "pism/util/ConfigInterface.hh"</span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="preprocessor">#include "pism/util/Grid.hh"</span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="preprocessor">#include "pism/util/io/File.hh"</span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> </div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span><span class="preprocessor">#include "pism/energy/BTU_Full.hh"</span></div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span><span class="preprocessor">#include "pism/energy/BTU_Minimal.hh"</span></div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> </div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacepism.html">pism</a> {</div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="keyword">namespace </span>energy {</div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> </div>
<div class="foldopen" id="foldopen00032" data-start="{" data-end="}">
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"><a class="line" href="structpism_1_1energy_1_1BTUGrid_a4c3d764e2a054c54dd16c8d51002c480.html#a4c3d764e2a054c54dd16c8d51002c480"> 32</a></span><a class="code hl_function" href="structpism_1_1energy_1_1BTUGrid_a4c3d764e2a054c54dd16c8d51002c480.html#a4c3d764e2a054c54dd16c8d51002c480">BTUGrid::BTUGrid</a>(std::shared_ptr<const Context> ctx) {</div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> <a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">Mbz</a> = (<span class="keywordtype">unsigned</span> <a class="code hl_class" href="classint.html">int</a>) ctx->config()->get_number(<span class="stringliteral">"grid.Mbz"</span>);</div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2.html#ae27f635528fdf2bfbf27b05c7878ffb2">Lbz</a> = ctx->config()->get_number(<span class="stringliteral">"grid.Lbz"</span>);</div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span>}</div>
</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> </div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="foldopen" id="foldopen00038" data-start="{" data-end="}">
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"><a class="line" href="structpism_1_1energy_1_1BTUGrid_a13bfdb207f2bfab1bc41772bf2c588d7.html#a13bfdb207f2bfab1bc41772bf2c588d7"> 38</a></span><a class="code hl_struct" href="structpism_1_1energy_1_1BTUGrid.html">BTUGrid</a> <a class="code hl_function" href="structpism_1_1energy_1_1BTUGrid_a13bfdb207f2bfab1bc41772bf2c588d7.html#a13bfdb207f2bfab1bc41772bf2c588d7">BTUGrid::FromOptions</a>(std::shared_ptr<const Context> ctx) {</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <a class="code hl_struct" href="structpism_1_1energy_1_1BTUGrid.html">BTUGrid</a> result(ctx);</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <a class="code hl_typedef" href="classpism_1_1Config_a4dc1634c0eac358eb86303633024f810.html#a4dc1634c0eac358eb86303633024f810">Config::ConstPtr</a> config = ctx->config();</div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <a class="code hl_struct" href="structpism_1_1InputOptions.html">InputOptions</a> opts = <a class="code hl_function" href="namespacepism_a44fca05de5c3d0cb82c4a2910666b6e2.html#a44fca05de5c3d0cb82c4a2910666b6e2">process_input_options</a>(ctx->com(), config);</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keywordflow">if</span> (opts.<a class="code hl_variable" href="structpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70.html#a0fe5db51286e55c31b1575dc9ecc5d70">type</a> == <a class="code hl_enumvalue" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc">INIT_RESTART</a>) {</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="comment">// If we're initializing from a file we need to get the number of bedrock</span></div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="comment">// levels and the depth of the bed thermal layer from it:</span></div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <a class="code hl_class" href="classpism_1_1File.html">File</a> input_file(ctx->com(), opts.<a class="code hl_variable" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>, <a class="code hl_enumvalue" href="namespacepism_1_1io_a0caba8881b0d36c8cc1eccfa13c0e81f.html#a0caba8881b0d36c8cc1eccfa13c0e81fa6bde5f56cc5b2335b46d08f2ac2985be">io::PISM_NETCDF3</a>, <a class="code hl_enumvalue" href="namespacepism_1_1io_a12c1fd23e92335e2396baab0354b262f.html#a12c1fd23e92335e2396baab0354b262fabb5d91fa1da1214c24d193a75f11f0a2">io::PISM_READONLY</a>);</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> </div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> <span class="keywordflow">if</span> (input_file.<a class="code hl_function" href="classpism_1_1File_a6f0c4fc5187ec43c397aa9df8ebc0f03.html#a6f0c4fc5187ec43c397aa9df8ebc0f03">variable_exists</a>(<span class="stringliteral">"litho_temp"</span>)) {</div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <a class="code hl_class" href="classpism_1_1grid_1_1InputGridInfo.html">grid::InputGridInfo</a> info(input_file, <span class="stringliteral">"litho_temp"</span>, ctx->unit_system(),</div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <a class="code hl_enumvalue" href="namespacepism_1_1grid_a4de798cae6a9a0aacee8b2309b7a9db1.html#a4de798cae6a9a0aacee8b2309b7a9db1a1e3e0626398aaf53976610cb510ac34a">grid::CELL_CENTER</a>); <span class="comment">// grid registration is irrelevant</span></div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">Mbz</a> = info.<a class="code hl_variable" href="classpism_1_1grid_1_1InputGridInfo_a85eec189ab85091dc7a95acac4b7c6c4.html#a85eec189ab85091dc7a95acac4b7c6c4">z</a>.size();</div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2.html#ae27f635528fdf2bfbf27b05c7878ffb2">Lbz</a> = -info.<a class="code hl_variable" href="classpism_1_1grid_1_1InputGridInfo_a1930bb13d037a179d78fc90b1b995975.html#a1930bb13d037a179d78fc90b1b995975">z_min</a>;</div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="comment">// override values we got using config.get_number() in the constructor</span></div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">Mbz</a> = 1;</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2.html#ae27f635528fdf2bfbf27b05c7878ffb2">Lbz</a> = 0;</div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> }</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> input_file.<a class="code hl_function" href="classpism_1_1File_a815bb8942d8eaa33f33a8b022c005693.html#a815bb8942d8eaa33f33a8b022c005693">close</a>();</div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <span class="comment">// Bootstrapping or initializing without an input file.</span></div>
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">Mbz</a> = config->get_number(<span class="stringliteral">"grid.Mbz"</span>);</div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2.html#ae27f635528fdf2bfbf27b05c7878ffb2">Lbz</a> = config->get_number(<span class="stringliteral">"grid.Lbz"</span>);</div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> </div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="keywordflow">if</span> (result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">Mbz</a> == 1) {</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2.html#ae27f635528fdf2bfbf27b05c7878ffb2">Lbz</a> = 0;</div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> result.<a class="code hl_variable" href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">Mbz</a> = 1;</div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> }</div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> }</div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> <span class="keywordflow">return</span> result;</div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span>}</div>
</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span><span class="comment"></span> </div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span><span class="comment">/*! Allocate a complete or minimal bedrock thermal unit depending on the number of bedrock levels.</span></div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span><span class="comment"> *</span></div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span><span class="comment"> */</span></div>
<div class="foldopen" id="foldopen00079" data-start="{" data-end="}">
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a7dcc796be115ecbea0b3bf73c686b286.html#a7dcc796be115ecbea0b3bf73c686b286"> 79</a></span>std::shared_ptr<BedThermalUnit> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a7dcc796be115ecbea0b3bf73c686b286.html#a7dcc796be115ecbea0b3bf73c686b286">BedThermalUnit::FromOptions</a>(std::shared_ptr<const Grid> grid,</div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> std::shared_ptr<const Context> ctx) {</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> <span class="keyword">auto</span> bedrock_grid = <a class="code hl_function" href="structpism_1_1energy_1_1BTUGrid_a13bfdb207f2bfab1bc41772bf2c588d7.html#a13bfdb207f2bfab1bc41772bf2c588d7">BTUGrid::FromOptions</a>(ctx);</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> </div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> <span class="keywordflow">if</span> (bedrock_grid.Mbz > 1) {</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> <span class="keywordflow">return</span> std::make_shared<energy::BTU_Full>(<a class="code hl_function" href="classpism_1_1Component_a1d7fa2a58f259a9c5e464f8738db6ef0.html#a1d7fa2a58f259a9c5e464f8738db6ef0">grid</a>, bedrock_grid);</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> }</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keywordflow">return</span> std::make_shared<energy::BTU_Minimal>(<a class="code hl_function" href="classpism_1_1Component_a1d7fa2a58f259a9c5e464f8738db6ef0.html#a1d7fa2a58f259a9c5e464f8738db6ef0">grid</a>);</div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span>}</div>
</div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> </div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> </div>
<div class="foldopen" id="foldopen00092" data-start="{" data-end="}">
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a10155eafebd0a3ea9e376b500a41030d.html#a10155eafebd0a3ea9e376b500a41030d"> 92</a></span><a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a10155eafebd0a3ea9e376b500a41030d.html#a10155eafebd0a3ea9e376b500a41030d">BedThermalUnit::BedThermalUnit</a>(std::shared_ptr<const Grid> <a class="code hl_variable" href="namespacepism_a47d754ed3e959d5866b02a1b78b6a5b5.html#a47d754ed3e959d5866b02a1b78b6a5b5">g</a>)</div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> : <a class="code hl_class" href="classpism_1_1Component.html">Component</a>(<a class="code hl_variable" href="namespacepism_a47d754ed3e959d5866b02a1b78b6a5b5.html#a47d754ed3e959d5866b02a1b78b6a5b5">g</a>),</div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> m_bottom_surface_flux(m_grid, <span class="stringliteral">"bheatflx"</span>),</div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> m_top_surface_flux(m_grid, <span class="stringliteral">"heat_flux_from_bedrock"</span>) {</div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> </div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> {</div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_adfc811194c0ddcce465f80c9f7a5b4ef.html#adfc811194c0ddcce465f80c9f7a5b4ef">m_top_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>(0)</div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_a4a5cabddabc031e1a06d891aeb3767e5.html#a4a5cabddabc031e1a06d891aeb3767e5">long_name</a>(<span class="stringliteral">"upward geothermal flux at the top bedrock surface"</span>)</div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_a4d1585666afbef0f288b37ade7bc22ff.html#a4d1585666afbef0f288b37ade7bc22ff">units</a>(<span class="stringliteral">"W m^-2"</span>)</div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_aa7dcf96c8892d18b9d79dc466d33cd6f.html#aa7dcf96c8892d18b9d79dc466d33cd6f">output_units</a>(<span class="stringliteral">"mW m^-2"</span>)</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_a52ea20b48a66b8f214525e5078e11da7.html#a52ea20b48a66b8f214525e5078e11da7">standard_name</a>(<span class="stringliteral">"upward_geothermal_heat_flux_at_ground_level_in_land_ice"</span>);</div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_adfc811194c0ddcce465f80c9f7a5b4ef.html#adfc811194c0ddcce465f80c9f7a5b4ef">m_top_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>()[<span class="stringliteral">"comment"</span>] = <span class="stringliteral">"positive values correspond to an upward flux"</span>;</div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> }</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> {</div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> <span class="comment">// PROPOSED standard_name = lithosphere_upward_heat_flux</span></div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>(0)</div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_a4a5cabddabc031e1a06d891aeb3767e5.html#a4a5cabddabc031e1a06d891aeb3767e5">long_name</a>(<span class="stringliteral">"upward geothermal flux at the bottom bedrock surface"</span>)</div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_a4d1585666afbef0f288b37ade7bc22ff.html#a4d1585666afbef0f288b37ade7bc22ff">units</a>(<span class="stringliteral">"W m^-2"</span>) <span class="comment">// note: don't convert to "mW m^-2" when saving</span></div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> .<a class="code hl_function" href="classpism_1_1VariableMetadata_af62016818f22d6885d7b8523ddffc674.html#af62016818f22d6885d7b8523ddffc674">set_time_independent</a>(<span class="keyword">true</span>);</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> </div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>()[<span class="stringliteral">"comment"</span>] = <span class="stringliteral">"positive values correspond to an upward flux"</span>;</div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> }</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span>}</div>
</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="foldopen" id="foldopen00116" data-start="{" data-end="}">
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a6a2dfb1142ba186aa5fac12a69efb0d6.html#a6a2dfb1142ba186aa5fac12a69efb0d6"> 116</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a6a2dfb1142ba186aa5fac12a69efb0d6.html#a6a2dfb1142ba186aa5fac12a69efb0d6">BedThermalUnit::init</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structpism_1_1InputOptions.html">InputOptions</a> &opts) {</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> this-><a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a6443c4334e00de7c6e165030a4490d0a.html#a6443c4334e00de7c6e165030a4490d0a">init_impl</a>(opts);</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span>}</div>
</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span><span class="comment"></span> </div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span><span class="comment">//! \brief Initialize the bedrock thermal unit.</span></div>
<div class="foldopen" id="foldopen00121" data-start="{" data-end="}">
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a6443c4334e00de7c6e165030a4490d0a.html#a6443c4334e00de7c6e165030a4490d0a"> 121</a></span><span class="comment"></span><span class="keywordtype">void</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a6443c4334e00de7c6e165030a4490d0a.html#a6443c4334e00de7c6e165030a4490d0a">BedThermalUnit::init_impl</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structpism_1_1InputOptions.html">InputOptions</a> &opts) {</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> <span class="keyword">auto</span> input_file = <a class="code hl_variable" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_string(<span class="stringliteral">"energy.bedrock_thermal.file"</span>);</div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> </div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> <span class="keywordflow">if</span> (not input_file.empty()) {</div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> <a class="code hl_variable" href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">m_log</a>->message(2, <span class="stringliteral">" - Reading geothermal flux from '%s' ...\n"</span>,</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> input_file.c_str());</div>
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">regrid</a>(input_file, <a class="code hl_function" href="classpism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417.html#a81301b55ee990a23a3b8f8acde39f417">io::Default::Nil</a>());</div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> <a class="code hl_variable" href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">m_log</a>->message(2,</div>
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> <span class="stringliteral">" - Parameter %s is not set. Reading geothermal flux from '%s'...\n"</span>,</div>
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> <span class="stringliteral">"energy.bedrock_thermal.file"</span>,</div>
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> opts.<a class="code hl_variable" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>.c_str());</div>
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> </div>
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> <span class="keywordflow">switch</span> (opts.<a class="code hl_variable" href="structpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70.html#a0fe5db51286e55c31b1575dc9ecc5d70">type</a>) {</div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc">INIT_RESTART</a>:</div>
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_a0326efd779d857755513901da9a54992.html#a0326efd779d857755513901da9a54992">read</a>(opts.<a class="code hl_variable" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>, opts.<a class="code hl_variable" href="structpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4.html#ae33c7fb4ca1317444d959bc3e1514ba4">record</a>);</div>
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa260aa6280296d9fffc338c9ecdaba861">INIT_BOOTSTRAP</a>:</div>
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">regrid</a>(opts.<a class="code hl_variable" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>, <a class="code hl_class" href="classpism_1_1io_1_1Default.html">io::Default</a>(<a class="code hl_variable" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_number(</div>
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> <span class="stringliteral">"bootstrapping.defaults.geothermal_flux"</span>)));</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> <span class="keywordflow">break</span>;</div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> <span class="keywordflow">case</span> <a class="code hl_enumvalue" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa5059a278caac36d24acebb622448a8dd">INIT_OTHER</a>:</div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> <span class="keywordflow">default</span>:</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a2fbeaea4c4f4cdba0317bfa2ad5585ea.html#a2fbeaea4c4f4cdba0317bfa2ad5585ea">initialize_bottom_surface_flux</a>();</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> }</div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> }</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> <a class="code hl_function" href="classpism_1_1Component_a7737874c03a58a03498a33dc464d2ee9.html#a7737874c03a58a03498a33dc464d2ee9">regrid</a>(<span class="stringliteral">"bedrock thermal layer"</span>, <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>, <a class="code hl_enumvalue" href="classpism_1_1Component_a48f8d0b81b7853d4e3fba0de79ec4a7f.html#a48f8d0b81b7853d4e3fba0de79ec4a7fa27f687170795f16d7eb334423b0bc9de">REGRID_WITHOUT_REGRID_VARS</a>);</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span>}</div>
</div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> </div>
<div class="foldopen" id="foldopen00152" data-start="{" data-end="}">
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a2fbeaea4c4f4cdba0317bfa2ad5585ea.html#a2fbeaea4c4f4cdba0317bfa2ad5585ea"> 152</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a2fbeaea4c4f4cdba0317bfa2ad5585ea.html#a2fbeaea4c4f4cdba0317bfa2ad5585ea">BedThermalUnit::initialize_bottom_surface_flux</a>() {</div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> <span class="keyword">const</span> <span class="keywordtype">double</span> heat_flux = <a class="code hl_variable" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_number(<span class="stringliteral">"bootstrapping.defaults.geothermal_flux"</span>);</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> </div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> <a class="code hl_variable" href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">m_log</a>->message(2, <span class="stringliteral">" using constant geothermal flux %f W m-2 ...\n"</span>,</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> heat_flux);</div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_a9959fcf0124f084e6a2835ed745ce0d1.html#a9959fcf0124f084e6a2835ed745ce0d1">set</a>(heat_flux);</div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span>}</div>
</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span><span class="comment"></span> </div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span><span class="comment">/** Returns the vertical spacing used by the bedrock grid.</span></div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span><span class="comment"> *</span></div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span><span class="comment"> */</span></div>
<div class="foldopen" id="foldopen00164" data-start="{" data-end="}">
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_ac059f034933c5eb3997114b18f9e3f5b.html#ac059f034933c5eb3997114b18f9e3f5b"> 164</a></span><span class="keywordtype">double</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_ac059f034933c5eb3997114b18f9e3f5b.html#ac059f034933c5eb3997114b18f9e3f5b">BedThermalUnit::vertical_spacing</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> <span class="keywordflow">return</span> this-><a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a9aa4a9448e30c0dba0bf72adafff15a8.html#a9aa4a9448e30c0dba0bf72adafff15a8">vertical_spacing_impl</a>();</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span>}</div>
</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span><span class="comment"></span> </div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span><span class="comment">/*!</span></div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span><span class="comment"> * Return the depth of the bedrock thermal layer.</span></div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span><span class="comment"> */</span></div>
<div class="foldopen" id="foldopen00171" data-start="{" data-end="}">
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a1c2a795ce7d829d5489f03da25ba74cd.html#a1c2a795ce7d829d5489f03da25ba74cd"> 171</a></span><span class="keywordtype">double</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a1c2a795ce7d829d5489f03da25ba74cd.html#a1c2a795ce7d829d5489f03da25ba74cd">BedThermalUnit::depth</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keywordflow">return</span> this-><a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a7b8432ffbed9e58098c255c2d6235f0f.html#a7b8432ffbed9e58098c255c2d6235f0f">depth_impl</a>();</div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span>}</div>
</div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span><span class="comment"></span> </div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span><span class="comment">/*!</span></div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span><span class="comment"> * Return the number of levels in the bedrock thermal layer.</span></div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span><span class="comment"> */</span></div>
<div class="foldopen" id="foldopen00178" data-start="{" data-end="}">
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_af6dda43e1b39561c1243f913ff7492f1.html#af6dda43e1b39561c1243f913ff7492f1"> 178</a></span><span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_af6dda43e1b39561c1243f913ff7492f1.html#af6dda43e1b39561c1243f913ff7492f1">BedThermalUnit::Mz</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="keywordflow">return</span> this-><a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_ab54d7fc49cfdcf84304b92387c5de025.html#ab54d7fc49cfdcf84304b92387c5de025">Mz_impl</a>();</div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span>}</div>
</div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> </div>
<div class="foldopen" id="foldopen00182" data-start="{" data-end="}">
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a8123a093ba1065e040baf8c5f4353267.html#a8123a093ba1065e040baf8c5f4353267"> 182</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a8123a093ba1065e040baf8c5f4353267.html#a8123a093ba1065e040baf8c5f4353267">BedThermalUnit::define_model_state_impl</a>(<span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1File.html">File</a> &output)<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb.html#a3e1a5859cef073a95e5e0cc5f1cc0fdb">define</a>(output, <a class="code hl_enumvalue" href="namespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77.html#a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de">io::PISM_DOUBLE</a>);</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span>}</div>
</div>
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> </div>
<div class="foldopen" id="foldopen00186" data-start="{" data-end="}">
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a993e7c538a2e7556c39c4d2973d9a28b.html#a993e7c538a2e7556c39c4d2973d9a28b"> 186</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a993e7c538a2e7556c39c4d2973d9a28b.html#a993e7c538a2e7556c39c4d2973d9a28b">BedThermalUnit::write_model_state_impl</a>(<span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1File.html">File</a> &output)<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>.<a class="code hl_function" href="classpism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793.html#a4cdaeb827d166a076668d2ab86416793">write</a>(output);</div>
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span>}</div>
</div>
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> </div>
<div class="foldopen" id="foldopen00190" data-start="{" data-end="}">
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_aae52fe78cdf59fc20380f72eb34eda02.html#aae52fe78cdf59fc20380f72eb34eda02"> 190</a></span><a class="code hl_typedef" href="namespacepism_a6154a990ba873c6ca606d8a320c441ac.html#a6154a990ba873c6ca606d8a320c441ac">DiagnosticList</a> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_aae52fe78cdf59fc20380f72eb34eda02.html#aae52fe78cdf59fc20380f72eb34eda02">BedThermalUnit::diagnostics_impl</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> <a class="code hl_typedef" href="namespacepism_a6154a990ba873c6ca606d8a320c441ac.html#a6154a990ba873c6ca606d8a320c441ac">DiagnosticList</a> result = {</div>
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> {<span class="stringliteral">"bheatflx"</span>, <a class="code hl_function" href="classpism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9.html#a2648c1bc92c5e333ecad30e9a5687ea9">Diagnostic::wrap</a>(<a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>)},</div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> {<span class="stringliteral">"heat_flux_from_bedrock"</span>, <a class="code hl_typedef" href="classpism_1_1Diagnostic_a94d5717226f2c89299c0c08168f01455.html#a94d5717226f2c89299c0c08168f01455">Diagnostic::Ptr</a>(<span class="keyword">new</span> <a class="code hl_class" href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level.html">BTU_geothermal_flux_at_ground_level</a>(<span class="keyword">this</span>))}};</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> </div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_flag(<span class="stringliteral">"output.ISMIP6"</span>)) {</div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> result[<span class="stringliteral">"hfgeoubed"</span>] = <a class="code hl_typedef" href="classpism_1_1Diagnostic_a94d5717226f2c89299c0c08168f01455.html#a94d5717226f2c89299c0c08168f01455">Diagnostic::Ptr</a>(<span class="keyword">new</span> <a class="code hl_class" href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level.html">BTU_geothermal_flux_at_ground_level</a>(<span class="keyword">this</span>));</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> }</div>
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <span class="keywordflow">return</span> result;</div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span>}</div>
</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> </div>
<div class="foldopen" id="foldopen00201" data-start="{" data-end="}">
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a3ac86dafc8cc8cf46f986c7228867104.html#a3ac86dafc8cc8cf46f986c7228867104"> 201</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a3ac86dafc8cc8cf46f986c7228867104.html#a3ac86dafc8cc8cf46f986c7228867104">BedThermalUnit::update</a>(<span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bedrock_top_temperature,</div>
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> <span class="keywordtype">double</span> t, <span class="keywordtype">double</span> dt) {</div>
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> this-><a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_ae1f93a7dbc10618f045c577235b80111.html#ae1f93a7dbc10618f045c577235b80111">update_impl</a>(bedrock_top_temperature, t, dt);</div>
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span>}</div>
</div>
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> </div>
<div class="foldopen" id="foldopen00206" data-start="{" data-end="}">
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_a4af18f2d395062dc40417804e56f985c.html#a4af18f2d395062dc40417804e56f985c"> 206</a></span><span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a>& <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_a4af18f2d395062dc40417804e56f985c.html#a4af18f2d395062dc40417804e56f985c">BedThermalUnit::flux_through_top_surface</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_adfc811194c0ddcce465f80c9f7a5b4ef.html#adfc811194c0ddcce465f80c9f7a5b4ef">m_top_surface_flux</a>;</div>
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span>}</div>
</div>
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="foldopen" id="foldopen00210" data-start="{" data-end="}">
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BedThermalUnit_acc771778288822c79a0f6e09a26f04c7.html#acc771778288822c79a0f6e09a26f04c7"> 210</a></span><span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a>& <a class="code hl_function" href="classpism_1_1energy_1_1BedThermalUnit_acc771778288822c79a0f6e09a26f04c7.html#acc771778288822c79a0f6e09a26f04c7">BedThermalUnit::flux_through_bottom_surface</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">m_bottom_surface_flux</a>;</div>
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span>}</div>
</div>
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> </div>
<div class="foldopen" id="foldopen00214" data-start="{" data-end="}">
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_ab67cc051f8a23272dacdcffda74e4f64.html#ab67cc051f8a23272dacdcffda74e4f64"> 214</a></span><a class="code hl_function" href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_ab67cc051f8a23272dacdcffda74e4f64.html#ab67cc051f8a23272dacdcffda74e4f64">BTU_geothermal_flux_at_ground_level::BTU_geothermal_flux_at_ground_level</a>(<span class="keyword">const</span> <a class="code hl_class" href="classpism_1_1energy_1_1BedThermalUnit.html">BedThermalUnit</a> *m)</div>
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> : <a class="code hl_class" href="classpism_1_1Diag.html">Diag</a><<a class="code hl_class" href="classpism_1_1energy_1_1BedThermalUnit.html">BedThermalUnit</a>>(m) {</div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> </div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="keyword">auto</span> ismip6 = <a class="code hl_variable" href="classpism_1_1Diagnostic_afdafdc402891ace41badf7a4c33bac10.html#afdafdc402891ace41badf7a4c33bac10">m_config</a>->get_flag(<span class="stringliteral">"output.ISMIP6"</span>);</div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <a class="code hl_variable" href="classpism_1_1Diagnostic_a7590d3d6d714ca1bbc99787baea537e0.html#a7590d3d6d714ca1bbc99787baea537e0">m_vars</a> = { { <a class="code hl_variable" href="classpism_1_1Diagnostic_a66c35ec2a3236c20757ba9ce5880eb6d.html#a66c35ec2a3236c20757ba9ce5880eb6d">m_sys</a>, ismip6 ? <span class="stringliteral">"hfgeoubed"</span> : <span class="stringliteral">"heat_flux_from_bedrock"</span> } };</div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> <a class="code hl_variable" href="classpism_1_1Diagnostic_a7590d3d6d714ca1bbc99787baea537e0.html#a7590d3d6d714ca1bbc99787baea537e0">m_vars</a>[0]</div>
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> .long_name(<span class="stringliteral">"upward geothermal flux at the top bedrock surface"</span>)</div>
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> .standard_name((ismip6 ? <span class="stringliteral">"upward_geothermal_heat_flux_in_land_ice"</span> :</div>
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="stringliteral">"upward_geothermal_heat_flux_at_ground_level_in_land_ice"</span>))</div>
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> .units(<span class="stringliteral">"W m^-2"</span>)</div>
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> .output_units(<span class="stringliteral">"mW m^-2"</span>);</div>
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> <a class="code hl_variable" href="classpism_1_1Diagnostic_a7590d3d6d714ca1bbc99787baea537e0.html#a7590d3d6d714ca1bbc99787baea537e0">m_vars</a>[0][<span class="stringliteral">"comment"</span>] = <span class="stringliteral">"positive values correspond to an upward flux"</span>;</div>
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span>}</div>
</div>
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="foldopen" id="foldopen00228" data-start="{" data-end="}">
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"><a class="line" href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_add140bb626dac5ef0b87acaf156fd720.html#add140bb626dac5ef0b87acaf156fd720"> 228</a></span>std::shared_ptr<array::Array> <a class="code hl_function" href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_add140bb626dac5ef0b87acaf156fd720.html#add140bb626dac5ef0b87acaf156fd720">BTU_geothermal_flux_at_ground_level::compute_impl</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> <span class="keyword">auto</span> result = std::make_shared<array::Scalar>(<a class="code hl_variable" href="classpism_1_1Diagnostic_af0eaf7c1c949d96b5c5ac945c7b744ca.html#af0eaf7c1c949d96b5c5ac945c7b744ca">m_grid</a>, <span class="stringliteral">"hfgeoubed"</span>);</div>
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> result->metadata() = <a class="code hl_variable" href="classpism_1_1Diagnostic_a7590d3d6d714ca1bbc99787baea537e0.html#a7590d3d6d714ca1bbc99787baea537e0">m_vars</a>[0];</div>
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> </div>
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> result->copy_from(<a class="code hl_variable" href="classpism_1_1Diag_aa3e0516ca815c840bfa479256aa1f711.html#aa3e0516ca815c840bfa479256aa1f711">model</a>->flux_through_top_surface());</div>
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> </div>
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <span class="keywordflow">return</span> result;</div>
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span>}</div>
</div>
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> </div>
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span>} <span class="comment">// end of namespace energy</span></div>
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span>} <span class="comment">// end of namespace pism</span></div>
<div class="ttc" id="aclassint_html"><div class="ttname"><a href="classint.html">int</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a1d7fa2a58f259a9c5e464f8738db6ef0_html_a1d7fa2a58f259a9c5e464f8738db6ef0"><div class="ttname"><a href="classpism_1_1Component_a1d7fa2a58f259a9c5e464f8738db6ef0.html#a1d7fa2a58f259a9c5e464f8738db6ef0">pism::Component::grid</a></div><div class="ttdeci">std::shared_ptr< const Grid > grid() const</div><div class="ttdef"><b>Definition</b> <a href="Component_8cc_source.html#l00105">Component.cc:105</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84_html_a28f298fc2133baae8cebf9dedf3b4d84"><div class="ttname"><a href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">pism::Component::m_config</a></div><div class="ttdeci">const Config::ConstPtr m_config</div><div class="ttdoc">configuration database used by this component</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00158">Component.hh:158</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a29575eba605feccf4403d6b4ff0954a4_html_a29575eba605feccf4403d6b4ff0954a4"><div class="ttname"><a href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">pism::Component::m_log</a></div><div class="ttdeci">const Logger::ConstPtr m_log</div><div class="ttdoc">logger (for easy access)</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00162">Component.hh:162</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a48f8d0b81b7853d4e3fba0de79ec4a7f_html_a48f8d0b81b7853d4e3fba0de79ec4a7fa27f687170795f16d7eb334423b0bc9de"><div class="ttname"><a href="classpism_1_1Component_a48f8d0b81b7853d4e3fba0de79ec4a7f.html#a48f8d0b81b7853d4e3fba0de79ec4a7fa27f687170795f16d7eb334423b0bc9de">pism::Component::REGRID_WITHOUT_REGRID_VARS</a></div><div class="ttdeci">@ REGRID_WITHOUT_REGRID_VARS</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00151">Component.hh:151</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a7737874c03a58a03498a33dc464d2ee9_html_a7737874c03a58a03498a33dc464d2ee9"><div class="ttname"><a href="classpism_1_1Component_a7737874c03a58a03498a33dc464d2ee9.html#a7737874c03a58a03498a33dc464d2ee9">pism::Component::regrid</a></div><div class="ttdeci">void regrid(const std::string &module_name, array::Array &variable, RegriddingFlag flag=NO_REGRID_WITHOUT_REGRID_VARS)</div><div class="ttdef"><b>Definition</b> <a href="Component_8cc_source.html#l00159">Component.cc:159</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_html"><div class="ttname"><a href="classpism_1_1Component.html">pism::Component</a></div><div class="ttdoc">A class defining a common interface for most PISM sub-models.</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00118">Component.hh:118</a></div></div>
<div class="ttc" id="aclasspism_1_1Config_a4dc1634c0eac358eb86303633024f810_html_a4dc1634c0eac358eb86303633024f810"><div class="ttname"><a href="classpism_1_1Config_a4dc1634c0eac358eb86303633024f810.html#a4dc1634c0eac358eb86303633024f810">pism::Config::ConstPtr</a></div><div class="ttdeci">std::shared_ptr< const Config > ConstPtr</div><div class="ttdef"><b>Definition</b> <a href="ConfigInterface_8hh_source.html#l00057">ConfigInterface.hh:57</a></div></div>
<div class="ttc" id="aclasspism_1_1Diag_aa3e0516ca815c840bfa479256aa1f711_html_aa3e0516ca815c840bfa479256aa1f711"><div class="ttname"><a href="classpism_1_1Diag_aa3e0516ca815c840bfa479256aa1f711.html#aa3e0516ca815c840bfa479256aa1f711">pism::Diag< BedThermalUnit >::model</a></div><div class="ttdeci">const BedThermalUnit * model</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00172">Diagnostic.hh:172</a></div></div>
<div class="ttc" id="aclasspism_1_1Diag_html"><div class="ttname"><a href="classpism_1_1Diag.html">pism::Diag</a></div><div class="ttdoc">A template derived from Diagnostic, adding a "Model".</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00166">Diagnostic.hh:166</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9_html_a2648c1bc92c5e333ecad30e9a5687ea9"><div class="ttname"><a href="classpism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9.html#a2648c1bc92c5e333ecad30e9a5687ea9">pism::Diagnostic::wrap</a></div><div class="ttdeci">static Ptr wrap(const T &input)</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00160">Diagnostic.hh:160</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_a66c35ec2a3236c20757ba9ce5880eb6d_html_a66c35ec2a3236c20757ba9ce5880eb6d"><div class="ttname"><a href="classpism_1_1Diagnostic_a66c35ec2a3236c20757ba9ce5880eb6d.html#a66c35ec2a3236c20757ba9ce5880eb6d">pism::Diagnostic::m_sys</a></div><div class="ttdeci">const units::System::Ptr m_sys</div><div class="ttdoc">the unit system</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00116">Diagnostic.hh:116</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_a7590d3d6d714ca1bbc99787baea537e0_html_a7590d3d6d714ca1bbc99787baea537e0"><div class="ttname"><a href="classpism_1_1Diagnostic_a7590d3d6d714ca1bbc99787baea537e0.html#a7590d3d6d714ca1bbc99787baea537e0">pism::Diagnostic::m_vars</a></div><div class="ttdeci">std::vector< SpatialVariableMetadata > m_vars</div><div class="ttdoc">metadata corresponding to NetCDF variables</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00120">Diagnostic.hh:120</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_a94d5717226f2c89299c0c08168f01455_html_a94d5717226f2c89299c0c08168f01455"><div class="ttname"><a href="classpism_1_1Diagnostic_a94d5717226f2c89299c0c08168f01455.html#a94d5717226f2c89299c0c08168f01455">pism::Diagnostic::Ptr</a></div><div class="ttdeci">std::shared_ptr< Diagnostic > Ptr</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00065">Diagnostic.hh:65</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_af0eaf7c1c949d96b5c5ac945c7b744ca_html_af0eaf7c1c949d96b5c5ac945c7b744ca"><div class="ttname"><a href="classpism_1_1Diagnostic_af0eaf7c1c949d96b5c5ac945c7b744ca.html#af0eaf7c1c949d96b5c5ac945c7b744ca">pism::Diagnostic::m_grid</a></div><div class="ttdeci">std::shared_ptr< const Grid > m_grid</div><div class="ttdoc">the grid</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00114">Diagnostic.hh:114</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_afdafdc402891ace41badf7a4c33bac10_html_afdafdc402891ace41badf7a4c33bac10"><div class="ttname"><a href="classpism_1_1Diagnostic_afdafdc402891ace41badf7a4c33bac10.html#afdafdc402891ace41badf7a4c33bac10">pism::Diagnostic::m_config</a></div><div class="ttdeci">const Config::ConstPtr m_config</div><div class="ttdoc">Configuration flags and parameters.</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00118">Diagnostic.hh:118</a></div></div>
<div class="ttc" id="aclasspism_1_1File_a6f0c4fc5187ec43c397aa9df8ebc0f03_html_a6f0c4fc5187ec43c397aa9df8ebc0f03"><div class="ttname"><a href="classpism_1_1File_a6f0c4fc5187ec43c397aa9df8ebc0f03.html#a6f0c4fc5187ec43c397aa9df8ebc0f03">pism::File::variable_exists</a></div><div class="ttdeci">bool variable_exists(const std::string &short_name) const</div><div class="ttdoc">Checks if a variable exists.</div><div class="ttdef"><b>Definition</b> <a href="File_8cc_source.html#l00378">File.cc:378</a></div></div>
<div class="ttc" id="aclasspism_1_1File_a815bb8942d8eaa33f33a8b022c005693_html_a815bb8942d8eaa33f33a8b022c005693"><div class="ttname"><a href="classpism_1_1File_a815bb8942d8eaa33f33a8b022c005693.html#a815bb8942d8eaa33f33a8b022c005693">pism::File::close</a></div><div class="ttdeci">void close()</div><div class="ttdef"><b>Definition</b> <a href="File_8cc_source.html#l00237">File.cc:237</a></div></div>
<div class="ttc" id="aclasspism_1_1File_html"><div class="ttname"><a href="classpism_1_1File.html">pism::File</a></div><div class="ttdoc">High-level PISM I/O class.</div><div class="ttdef"><b>Definition</b> <a href="File_8hh_source.html#l00054">File.hh:55</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_a4a5cabddabc031e1a06d891aeb3767e5_html_a4a5cabddabc031e1a06d891aeb3767e5"><div class="ttname"><a href="classpism_1_1VariableMetadata_a4a5cabddabc031e1a06d891aeb3767e5.html#a4a5cabddabc031e1a06d891aeb3767e5">pism::VariableMetadata::long_name</a></div><div class="ttdeci">VariableMetadata & long_name(const std::string &input)</div><div class="ttdef"><b>Definition</b> <a href="VariableMetadata_8hh_source.html#l00114">VariableMetadata.hh:114</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_a4d1585666afbef0f288b37ade7bc22ff_html_a4d1585666afbef0f288b37ade7bc22ff"><div class="ttname"><a href="classpism_1_1VariableMetadata_a4d1585666afbef0f288b37ade7bc22ff.html#a4d1585666afbef0f288b37ade7bc22ff">pism::VariableMetadata::units</a></div><div class="ttdeci">VariableMetadata & units(const std::string &input)</div><div class="ttdef"><b>Definition</b> <a href="VariableMetadata_8hh_source.html#l00122">VariableMetadata.hh:122</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_a52ea20b48a66b8f214525e5078e11da7_html_a52ea20b48a66b8f214525e5078e11da7"><div class="ttname"><a href="classpism_1_1VariableMetadata_a52ea20b48a66b8f214525e5078e11da7.html#a52ea20b48a66b8f214525e5078e11da7">pism::VariableMetadata::standard_name</a></div><div class="ttdeci">VariableMetadata & standard_name(const std::string &input)</div><div class="ttdef"><b>Definition</b> <a href="VariableMetadata_8hh_source.html#l00118">VariableMetadata.hh:118</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_aa7dcf96c8892d18b9d79dc466d33cd6f_html_aa7dcf96c8892d18b9d79dc466d33cd6f"><div class="ttname"><a href="classpism_1_1VariableMetadata_aa7dcf96c8892d18b9d79dc466d33cd6f.html#aa7dcf96c8892d18b9d79dc466d33cd6f">pism::VariableMetadata::output_units</a></div><div class="ttdeci">VariableMetadata & output_units(const std::string &input)</div><div class="ttdef"><b>Definition</b> <a href="VariableMetadata_8hh_source.html#l00126">VariableMetadata.hh:126</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_af62016818f22d6885d7b8523ddffc674_html_af62016818f22d6885d7b8523ddffc674"><div class="ttname"><a href="classpism_1_1VariableMetadata_af62016818f22d6885d7b8523ddffc674.html#af62016818f22d6885d7b8523ddffc674">pism::VariableMetadata::set_time_independent</a></div><div class="ttdeci">VariableMetadata & set_time_independent(bool flag)</div><div class="ttdef"><b>Definition</b> <a href="VariableMetadata_8cc_source.html#l00060">VariableMetadata.cc:60</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a0326efd779d857755513901da9a54992_html_a0326efd779d857755513901da9a54992"><div class="ttname"><a href="classpism_1_1array_1_1Array_a0326efd779d857755513901da9a54992.html#a0326efd779d857755513901da9a54992">pism::array::Array::read</a></div><div class="ttdeci">void read(const std::string &filename, unsigned int time)</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00731">Array.cc:731</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb_html_a3e1a5859cef073a95e5e0cc5f1cc0fdb"><div class="ttname"><a href="classpism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb.html#a3e1a5859cef073a95e5e0cc5f1cc0fdb">pism::array::Array::define</a></div><div class="ttdeci">void define(const File &file, io::Type default_type) const</div><div class="ttdoc">Define variables corresponding to an Array in a file opened using file.</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00463">Array.cc:463</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793_html_a4cdaeb827d166a076668d2ab86416793"><div class="ttname"><a href="classpism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793.html#a4cdaeb827d166a076668d2ab86416793">pism::array::Array::write</a></div><div class="ttdeci">void write(const std::string &filename) const</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00722">Array.cc:722</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a9959fcf0124f084e6a2835ed745ce0d1_html_a9959fcf0124f084e6a2835ed745ce0d1"><div class="ttname"><a href="classpism_1_1array_1_1Array_a9959fcf0124f084e6a2835ed745ce0d1.html#a9959fcf0124f084e6a2835ed745ce0d1">pism::array::Array::set</a></div><div class="ttdeci">void set(double c)</div><div class="ttdoc">Result: v[j] <- c for all j.</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00629">Array.cc:629</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16_html_aa7de6be7e8f785321df81d9fd6518a16"><div class="ttname"><a href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">pism::array::Array::regrid</a></div><div class="ttdeci">void regrid(const std::string &filename, io::Default default_value)</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00736">Array.cc:736</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4_html_af9eece42153cd03bfc8ba237ae5310c4"><div class="ttname"><a href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">pism::array::Array::metadata</a></div><div class="ttdeci">SpatialVariableMetadata & metadata(unsigned int N=0)</div><div class="ttdoc">Returns a reference to the SpatialVariableMetadata object containing metadata for the compoment N.</div><div class="ttdef"><b>Definition</b> <a href="Array_8cc_source.html#l00476">Array.cc:476</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Scalar_html"><div class="ttname"><a href="classpism_1_1array_1_1Scalar.html">pism::array::Scalar</a></div><div class="ttdef"><b>Definition</b> <a href="Scalar_8hh_source.html#l00031">Scalar.hh:31</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_ab67cc051f8a23272dacdcffda74e4f64_html_ab67cc051f8a23272dacdcffda74e4f64"><div class="ttname"><a href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_ab67cc051f8a23272dacdcffda74e4f64.html#ab67cc051f8a23272dacdcffda74e4f64">pism::energy::BTU_geothermal_flux_at_ground_level::BTU_geothermal_flux_at_ground_level</a></div><div class="ttdeci">BTU_geothermal_flux_at_ground_level(const BedThermalUnit *m)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00214">BedThermalUnit.cc:214</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_add140bb626dac5ef0b87acaf156fd720_html_add140bb626dac5ef0b87acaf156fd720"><div class="ttname"><a href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_add140bb626dac5ef0b87acaf156fd720.html#add140bb626dac5ef0b87acaf156fd720">pism::energy::BTU_geothermal_flux_at_ground_level::compute_impl</a></div><div class="ttdeci">virtual std::shared_ptr< array::Array > compute_impl() const</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00228">BedThermalUnit.cc:228</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BTU__geothermal__flux__at__ground__level_html"><div class="ttname"><a href="classpism_1_1energy_1_1BTU__geothermal__flux__at__ground__level.html">pism::energy::BTU_geothermal_flux_at_ground_level</a></div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00154">BedThermalUnit.hh:154</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a10155eafebd0a3ea9e376b500a41030d_html_a10155eafebd0a3ea9e376b500a41030d"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a10155eafebd0a3ea9e376b500a41030d.html#a10155eafebd0a3ea9e376b500a41030d">pism::energy::BedThermalUnit::BedThermalUnit</a></div><div class="ttdeci">BedThermalUnit(std::shared_ptr< const Grid > g)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00092">BedThermalUnit.cc:92</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a1c2a795ce7d829d5489f03da25ba74cd_html_a1c2a795ce7d829d5489f03da25ba74cd"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a1c2a795ce7d829d5489f03da25ba74cd.html#a1c2a795ce7d829d5489f03da25ba74cd">pism::energy::BedThermalUnit::depth</a></div><div class="ttdeci">double depth() const</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00171">BedThermalUnit.cc:171</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a2fbeaea4c4f4cdba0317bfa2ad5585ea_html_a2fbeaea4c4f4cdba0317bfa2ad5585ea"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a2fbeaea4c4f4cdba0317bfa2ad5585ea.html#a2fbeaea4c4f4cdba0317bfa2ad5585ea">pism::energy::BedThermalUnit::initialize_bottom_surface_flux</a></div><div class="ttdeci">virtual void initialize_bottom_surface_flux()</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00152">BedThermalUnit.cc:152</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a3ac86dafc8cc8cf46f986c7228867104_html_a3ac86dafc8cc8cf46f986c7228867104"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a3ac86dafc8cc8cf46f986c7228867104.html#a3ac86dafc8cc8cf46f986c7228867104">pism::energy::BedThermalUnit::update</a></div><div class="ttdeci">void update(const array::Scalar &bedrock_top_temperature, double t, double dt)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00201">BedThermalUnit.cc:201</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a4af18f2d395062dc40417804e56f985c_html_a4af18f2d395062dc40417804e56f985c"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a4af18f2d395062dc40417804e56f985c.html#a4af18f2d395062dc40417804e56f985c">pism::energy::BedThermalUnit::flux_through_top_surface</a></div><div class="ttdeci">const array::Scalar & flux_through_top_surface() const</div><div class="ttdoc">Return the upward heat flux through the top surface of the bedrock thermal layer.</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00206">BedThermalUnit.cc:206</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8_html_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a5c7563d7cfb2e6d1c0d8f2468a2a4ca8.html#a5c7563d7cfb2e6d1c0d8f2468a2a4ca8">pism::energy::BedThermalUnit::m_bottom_surface_flux</a></div><div class="ttdeci">array::Scalar m_bottom_surface_flux</div><div class="ttdoc">upward heat flux through the bottom surface of the bed thermal layer</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00148">BedThermalUnit.hh:148</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a6443c4334e00de7c6e165030a4490d0a_html_a6443c4334e00de7c6e165030a4490d0a"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a6443c4334e00de7c6e165030a4490d0a.html#a6443c4334e00de7c6e165030a4490d0a">pism::energy::BedThermalUnit::init_impl</a></div><div class="ttdeci">virtual void init_impl(const InputOptions &opts)</div><div class="ttdoc">Initialize the bedrock thermal unit.</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00121">BedThermalUnit.cc:121</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a6a2dfb1142ba186aa5fac12a69efb0d6_html_a6a2dfb1142ba186aa5fac12a69efb0d6"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a6a2dfb1142ba186aa5fac12a69efb0d6.html#a6a2dfb1142ba186aa5fac12a69efb0d6">pism::energy::BedThermalUnit::init</a></div><div class="ttdeci">void init(const InputOptions &opts)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00116">BedThermalUnit.cc:116</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a7b8432ffbed9e58098c255c2d6235f0f_html_a7b8432ffbed9e58098c255c2d6235f0f"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a7b8432ffbed9e58098c255c2d6235f0f.html#a7b8432ffbed9e58098c255c2d6235f0f">pism::energy::BedThermalUnit::depth_impl</a></div><div class="ttdeci">virtual double depth_impl() const =0</div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a7dcc796be115ecbea0b3bf73c686b286_html_a7dcc796be115ecbea0b3bf73c686b286"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a7dcc796be115ecbea0b3bf73c686b286.html#a7dcc796be115ecbea0b3bf73c686b286">pism::energy::BedThermalUnit::FromOptions</a></div><div class="ttdeci">static std::shared_ptr< BedThermalUnit > FromOptions(std::shared_ptr< const Grid > g, std::shared_ptr< const Context > ctx)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00079">BedThermalUnit.cc:79</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a8123a093ba1065e040baf8c5f4353267_html_a8123a093ba1065e040baf8c5f4353267"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a8123a093ba1065e040baf8c5f4353267.html#a8123a093ba1065e040baf8c5f4353267">pism::energy::BedThermalUnit::define_model_state_impl</a></div><div class="ttdeci">virtual void define_model_state_impl(const File &output) const</div><div class="ttdoc">The default (empty implementation).</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00182">BedThermalUnit.cc:182</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a993e7c538a2e7556c39c4d2973d9a28b_html_a993e7c538a2e7556c39c4d2973d9a28b"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a993e7c538a2e7556c39c4d2973d9a28b.html#a993e7c538a2e7556c39c4d2973d9a28b">pism::energy::BedThermalUnit::write_model_state_impl</a></div><div class="ttdeci">virtual void write_model_state_impl(const File &output) const</div><div class="ttdoc">The default (empty implementation).</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00186">BedThermalUnit.cc:186</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_a9aa4a9448e30c0dba0bf72adafff15a8_html_a9aa4a9448e30c0dba0bf72adafff15a8"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_a9aa4a9448e30c0dba0bf72adafff15a8.html#a9aa4a9448e30c0dba0bf72adafff15a8">pism::energy::BedThermalUnit::vertical_spacing_impl</a></div><div class="ttdeci">virtual double vertical_spacing_impl() const =0</div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_aae52fe78cdf59fc20380f72eb34eda02_html_aae52fe78cdf59fc20380f72eb34eda02"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_aae52fe78cdf59fc20380f72eb34eda02.html#aae52fe78cdf59fc20380f72eb34eda02">pism::energy::BedThermalUnit::diagnostics_impl</a></div><div class="ttdeci">virtual DiagnosticList diagnostics_impl() const</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00190">BedThermalUnit.cc:190</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_ab54d7fc49cfdcf84304b92387c5de025_html_ab54d7fc49cfdcf84304b92387c5de025"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_ab54d7fc49cfdcf84304b92387c5de025.html#ab54d7fc49cfdcf84304b92387c5de025">pism::energy::BedThermalUnit::Mz_impl</a></div><div class="ttdeci">virtual unsigned int Mz_impl() const =0</div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_ac059f034933c5eb3997114b18f9e3f5b_html_ac059f034933c5eb3997114b18f9e3f5b"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_ac059f034933c5eb3997114b18f9e3f5b.html#ac059f034933c5eb3997114b18f9e3f5b">pism::energy::BedThermalUnit::vertical_spacing</a></div><div class="ttdeci">double vertical_spacing() const</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00164">BedThermalUnit.cc:164</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_acc771778288822c79a0f6e09a26f04c7_html_acc771778288822c79a0f6e09a26f04c7"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_acc771778288822c79a0f6e09a26f04c7.html#acc771778288822c79a0f6e09a26f04c7">pism::energy::BedThermalUnit::flux_through_bottom_surface</a></div><div class="ttdeci">const array::Scalar & flux_through_bottom_surface() const</div><div class="ttdoc">Return the upward heat flux through the bottom surface of the bedrock thermal layer.</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00210">BedThermalUnit.cc:210</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_adfc811194c0ddcce465f80c9f7a5b4ef_html_adfc811194c0ddcce465f80c9f7a5b4ef"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_adfc811194c0ddcce465f80c9f7a5b4ef.html#adfc811194c0ddcce465f80c9f7a5b4ef">pism::energy::BedThermalUnit::m_top_surface_flux</a></div><div class="ttdeci">array::Scalar m_top_surface_flux</div><div class="ttdoc">upward heat flux through the top surface of the bed thermal layer</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00151">BedThermalUnit.hh:151</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_ae1f93a7dbc10618f045c577235b80111_html_ae1f93a7dbc10618f045c577235b80111"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_ae1f93a7dbc10618f045c577235b80111.html#ae1f93a7dbc10618f045c577235b80111">pism::energy::BedThermalUnit::update_impl</a></div><div class="ttdeci">virtual void update_impl(const array::Scalar &bedrock_top_temperature, double t, double dt)=0</div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_af6dda43e1b39561c1243f913ff7492f1_html_af6dda43e1b39561c1243f913ff7492f1"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit_af6dda43e1b39561c1243f913ff7492f1.html#af6dda43e1b39561c1243f913ff7492f1">pism::energy::BedThermalUnit::Mz</a></div><div class="ttdeci">unsigned int Mz() const</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00178">BedThermalUnit.cc:178</a></div></div>
<div class="ttc" id="aclasspism_1_1energy_1_1BedThermalUnit_html"><div class="ttname"><a href="classpism_1_1energy_1_1BedThermalUnit.html">pism::energy::BedThermalUnit</a></div><div class="ttdoc">Given the temperature of the top of the bedrock, for the duration of one time-step,...</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00101">BedThermalUnit.hh:101</a></div></div>
<div class="ttc" id="aclasspism_1_1grid_1_1InputGridInfo_a1930bb13d037a179d78fc90b1b995975_html_a1930bb13d037a179d78fc90b1b995975"><div class="ttname"><a href="classpism_1_1grid_1_1InputGridInfo_a1930bb13d037a179d78fc90b1b995975.html#a1930bb13d037a179d78fc90b1b995975">pism::grid::InputGridInfo::z_min</a></div><div class="ttdeci">double z_min</div><div class="ttdoc">minimal value of the z dimension</div><div class="ttdef"><b>Definition</b> <a href="Grid_8hh_source.html#l00086">Grid.hh:86</a></div></div>
<div class="ttc" id="aclasspism_1_1grid_1_1InputGridInfo_a85eec189ab85091dc7a95acac4b7c6c4_html_a85eec189ab85091dc7a95acac4b7c6c4"><div class="ttname"><a href="classpism_1_1grid_1_1InputGridInfo_a85eec189ab85091dc7a95acac4b7c6c4.html#a85eec189ab85091dc7a95acac4b7c6c4">pism::grid::InputGridInfo::z</a></div><div class="ttdeci">std::vector< double > z</div><div class="ttdoc">z coordinates</div><div class="ttdef"><b>Definition</b> <a href="Grid_8hh_source.html#l00095">Grid.hh:95</a></div></div>
<div class="ttc" id="aclasspism_1_1grid_1_1InputGridInfo_html"><div class="ttname"><a href="classpism_1_1grid_1_1InputGridInfo.html">pism::grid::InputGridInfo</a></div><div class="ttdoc">Contains parameters of an input file grid.</div><div class="ttdef"><b>Definition</b> <a href="Grid_8hh_source.html#l00068">Grid.hh:68</a></div></div>
<div class="ttc" id="aclasspism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417_html_a81301b55ee990a23a3b8f8acde39f417"><div class="ttname"><a href="classpism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417.html#a81301b55ee990a23a3b8f8acde39f417">pism::io::Default::Nil</a></div><div class="ttdeci">static Default Nil()</div><div class="ttdef"><b>Definition</b> <a href="IO__Flags_8hh_source.html#l00093">IO_Flags.hh:93</a></div></div>
<div class="ttc" id="aclasspism_1_1io_1_1Default_html"><div class="ttname"><a href="classpism_1_1io_1_1Default.html">pism::io::Default</a></div><div class="ttdef"><b>Definition</b> <a href="IO__Flags_8hh_source.html#l00087">IO_Flags.hh:87</a></div></div>
<div class="ttc" id="anamespacepism_1_1grid_a4de798cae6a9a0aacee8b2309b7a9db1_html_a4de798cae6a9a0aacee8b2309b7a9db1a1e3e0626398aaf53976610cb510ac34a"><div class="ttname"><a href="namespacepism_1_1grid_a4de798cae6a9a0aacee8b2309b7a9db1.html#a4de798cae6a9a0aacee8b2309b7a9db1a1e3e0626398aaf53976610cb510ac34a">pism::grid::CELL_CENTER</a></div><div class="ttdeci">@ CELL_CENTER</div><div class="ttdef"><b>Definition</b> <a href="Grid_8hh_source.html#l00056">Grid.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_1_1io_a0caba8881b0d36c8cc1eccfa13c0e81f_html_a0caba8881b0d36c8cc1eccfa13c0e81fa6bde5f56cc5b2335b46d08f2ac2985be"><div class="ttname"><a href="namespacepism_1_1io_a0caba8881b0d36c8cc1eccfa13c0e81f.html#a0caba8881b0d36c8cc1eccfa13c0e81fa6bde5f56cc5b2335b46d08f2ac2985be">pism::io::PISM_NETCDF3</a></div><div class="ttdeci">@ PISM_NETCDF3</div><div class="ttdef"><b>Definition</b> <a href="IO__Flags_8hh_source.html#l00057">IO_Flags.hh:57</a></div></div>
<div class="ttc" id="anamespacepism_1_1io_a12c1fd23e92335e2396baab0354b262f_html_a12c1fd23e92335e2396baab0354b262fabb5d91fa1da1214c24d193a75f11f0a2"><div class="ttname"><a href="namespacepism_1_1io_a12c1fd23e92335e2396baab0354b262f.html#a12c1fd23e92335e2396baab0354b262fabb5d91fa1da1214c24d193a75f11f0a2">pism::io::PISM_READONLY</a></div><div class="ttdeci">@ PISM_READONLY</div><div class="ttdoc">open an existing file for reading only</div><div class="ttdef"><b>Definition</b> <a href="IO__Flags_8hh_source.html#l00068">IO_Flags.hh:68</a></div></div>
<div class="ttc" id="anamespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77_html_a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de"><div class="ttname"><a href="namespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77.html#a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de">pism::io::PISM_DOUBLE</a></div><div class="ttdeci">@ PISM_DOUBLE</div><div class="ttdef"><b>Definition</b> <a href="IO__Flags_8hh_source.html#l00053">IO_Flags.hh:52</a></div></div>
<div class="ttc" id="anamespacepism_a44fca05de5c3d0cb82c4a2910666b6e2_html_a44fca05de5c3d0cb82c4a2910666b6e2"><div class="ttname"><a href="namespacepism_a44fca05de5c3d0cb82c4a2910666b6e2.html#a44fca05de5c3d0cb82c4a2910666b6e2">pism::process_input_options</a></div><div class="ttdeci">InputOptions process_input_options(MPI_Comm com, Config::ConstPtr config)</div><div class="ttdef"><b>Definition</b> <a href="Component_8cc_source.html#l00043">Component.cc:43</a></div></div>
<div class="ttc" id="anamespacepism_a47d754ed3e959d5866b02a1b78b6a5b5_html_a47d754ed3e959d5866b02a1b78b6a5b5"><div class="ttname"><a href="namespacepism_a47d754ed3e959d5866b02a1b78b6a5b5.html#a47d754ed3e959d5866b02a1b78b6a5b5">pism::g</a></div><div class="ttdeci">static const double g</div><div class="ttdef"><b>Definition</b> <a href="exactTestP_8cc_source.html#l00036">exactTestP.cc:36</a></div></div>
<div class="ttc" id="anamespacepism_a56e80801555b7f36f4dd28941739654a_html_a56e80801555b7f36f4dd28941739654aa260aa6280296d9fffc338c9ecdaba861"><div class="ttname"><a href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa260aa6280296d9fffc338c9ecdaba861">pism::INIT_BOOTSTRAP</a></div><div class="ttdeci">@ INIT_BOOTSTRAP</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00056">Component.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_a56e80801555b7f36f4dd28941739654a_html_a56e80801555b7f36f4dd28941739654aa5059a278caac36d24acebb622448a8dd"><div class="ttname"><a href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa5059a278caac36d24acebb622448a8dd">pism::INIT_OTHER</a></div><div class="ttdeci">@ INIT_OTHER</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00056">Component.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_a56e80801555b7f36f4dd28941739654a_html_a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc"><div class="ttname"><a href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc">pism::INIT_RESTART</a></div><div class="ttdeci">@ INIT_RESTART</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00056">Component.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_a6154a990ba873c6ca606d8a320c441ac_html_a6154a990ba873c6ca606d8a320c441ac"><div class="ttname"><a href="namespacepism_a6154a990ba873c6ca606d8a320c441ac.html#a6154a990ba873c6ca606d8a320c441ac">pism::DiagnosticList</a></div><div class="ttdeci">std::map< std::string, Diagnostic::Ptr > DiagnosticList</div><div class="ttdef"><b>Definition</b> <a href="Diagnostic_8hh_source.html#l00125">Diagnostic.hh:125</a></div></div>
<div class="ttc" id="anamespacepism_html"><div class="ttname"><a href="namespacepism.html">pism</a></div><div class="ttdef"><b>Definition</b> <a href="AgeColumnSystem_8cc_source.html#l00023">AgeColumnSystem.cc:23</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70_html_a0fe5db51286e55c31b1575dc9ecc5d70"><div class="ttname"><a href="structpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70.html#a0fe5db51286e55c31b1575dc9ecc5d70">pism::InputOptions::type</a></div><div class="ttdeci">InitializationType type</div><div class="ttdoc">initialization type</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00061">Component.hh:61</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5_html_a2dc298f0e83b951fa1df5eab910639e5"><div class="ttname"><a href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">pism::InputOptions::filename</a></div><div class="ttdeci">std::string filename</div><div class="ttdoc">name of the input file (if applicable)</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00063">Component.hh:63</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4_html_ae33c7fb4ca1317444d959bc3e1514ba4"><div class="ttname"><a href="structpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4.html#ae33c7fb4ca1317444d959bc3e1514ba4">pism::InputOptions::record</a></div><div class="ttdeci">unsigned int record</div><div class="ttdoc">index of the record to re-start from</div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00065">Component.hh:65</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_html"><div class="ttname"><a href="structpism_1_1InputOptions.html">pism::InputOptions</a></div><div class="ttdef"><b>Definition</b> <a href="Component_8hh_source.html#l00058">Component.hh:58</a></div></div>
<div class="ttc" id="astructpism_1_1energy_1_1BTUGrid_a13bfdb207f2bfab1bc41772bf2c588d7_html_a13bfdb207f2bfab1bc41772bf2c588d7"><div class="ttname"><a href="structpism_1_1energy_1_1BTUGrid_a13bfdb207f2bfab1bc41772bf2c588d7.html#a13bfdb207f2bfab1bc41772bf2c588d7">pism::energy::BTUGrid::FromOptions</a></div><div class="ttdeci">static BTUGrid FromOptions(std::shared_ptr< const Context > ctx)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00038">BedThermalUnit.cc:38</a></div></div>
<div class="ttc" id="astructpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1_html_a2639aee2143db451189cf24f7ce687b1"><div class="ttname"><a href="structpism_1_1energy_1_1BTUGrid_a2639aee2143db451189cf24f7ce687b1.html#a2639aee2143db451189cf24f7ce687b1">pism::energy::BTUGrid::Mbz</a></div><div class="ttdeci">unsigned int Mbz</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00040">BedThermalUnit.hh:40</a></div></div>
<div class="ttc" id="astructpism_1_1energy_1_1BTUGrid_a4c3d764e2a054c54dd16c8d51002c480_html_a4c3d764e2a054c54dd16c8d51002c480"><div class="ttname"><a href="structpism_1_1energy_1_1BTUGrid_a4c3d764e2a054c54dd16c8d51002c480.html#a4c3d764e2a054c54dd16c8d51002c480">pism::energy::BTUGrid::BTUGrid</a></div><div class="ttdeci">BTUGrid(std::shared_ptr< const Context > ctx)</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8cc_source.html#l00032">BedThermalUnit.cc:32</a></div></div>
<div class="ttc" id="astructpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2_html_ae27f635528fdf2bfbf27b05c7878ffb2"><div class="ttname"><a href="structpism_1_1energy_1_1BTUGrid_ae27f635528fdf2bfbf27b05c7878ffb2.html#ae27f635528fdf2bfbf27b05c7878ffb2">pism::energy::BTUGrid::Lbz</a></div><div class="ttdeci">double Lbz</div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00041">BedThermalUnit.hh:41</a></div></div>
<div class="ttc" id="astructpism_1_1energy_1_1BTUGrid_html"><div class="ttname"><a href="structpism_1_1energy_1_1BTUGrid.html">pism::energy::BTUGrid</a></div><div class="ttdef"><b>Definition</b> <a href="BedThermalUnit_8hh_source.html#l00036">BedThermalUnit.hh:36</a></div></div>
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