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Crude beginnings
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‎Dockerfile

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#
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# Image used for hosting scitran core with uwsgi.
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#
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# Example usage is in README.md
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#
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FROM ubuntu:14.04
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# Install pre-requisites
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RUN apt-get update \
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&& apt-get install -y \
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build-essential \
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ca-certificates curl \
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libatlas3-base \
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numactl \
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python-dev \
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python-pip \
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libffi-dev \
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libssl-dev \
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libpcre3 \
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libpcre3-dev \
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git \
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&& rm -rf /var/lib/apt/lists/* \
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&& pip install -U pip
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# Grab gosu for easy step-down from root in a docker-friendly manner
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# https://github.com/tianon/gosu
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#
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# Alternate key servers are due to reliability issues with ha.pool.sks-keyservers.net
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RUN curl -o /usr/local/bin/gosu -SL "https://github.com/tianon/gosu/releases/download/1.6/gosu-$(dpkg --print-architecture)" \
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&& curl -o /tmp/gosu.asc -SL "https://github.com/tianon/gosu/releases/download/1.6/gosu-$(dpkg --print-architecture).asc" \
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&& export GNUPGHOME="$(mktemp -d)" \
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&& for server in $(shuf -e ha.pool.sks-keyservers.net \
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hkp://p80.pool.sks-keyservers.net:80 \
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keyserver.ubuntu.com \
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hkp://keyserver.ubuntu.com:80 \
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pgp.mit.edu) ; do \
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gpg --keyserver "$server" --recv-keys B42F6819007F00F88E364FD4036A9C25BF357DD4 && break || : ; \
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done \
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&& gpg --batch --verify /tmp/gosu.asc /usr/local/bin/gosu \
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&& rm -r "$GNUPGHOME" /tmp/gosu.asc \
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&& chmod +x /usr/local/bin/gosu
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# Setup environment
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WORKDIR /var/scitran
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RUN mkdir -p \
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/var/scitran/config \
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/var/scitran/data \
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/var/scitran/code/api \
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/var/scitran/logs \
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/var/scitran/keys
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# Declaring a volume makes the intent to map externally explicit. This enables
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# the contents to survive/persist across container versions, and easy access
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# to the contents outside the container.
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#
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# Declaring the VOLUME in the Dockerfile guarantees the contents are empty
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# for any new container that doesn't specify a volume map via 'docker run -v '
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# or similar option.
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#
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VOLUME /var/scitran/keys
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VOLUME /var/scitran/data
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VOLUME /var/scitran/logs
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# Install pip modules
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#
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# Split this out for better cache re-use.
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#
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COPY requirements.txt docker/requirements-docker.txt /var/scitran/code/api/
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RUN pip install --upgrade pip wheel setuptools \
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&& pip install -r /var/scitran/code/api/requirements-docker.txt \
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&& pip install -r /var/scitran/code/api/requirements.txt
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COPY tests /var/scitran/code/api/tests/
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RUN bash -e -x /var/scitran/code/api/tests/bin/setup-integration-tests-ubuntu.sh
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# Copy full repo
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#
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COPY . /var/scitran/code/api/
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COPY docker/uwsgi-entrypoint.sh /var/scitran/
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COPY docker/uwsgi-config.ini /var/scitran/config/
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COPY docker/newrelic.ini /var/scitran/config/
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# Inject build information into image so the source of the container can be
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# determined from within it.
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ARG BRANCH_LABEL=NULL
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ARG COMMIT_HASH=0
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COPY docker/inject_build_info.sh /
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RUN /inject_build_info.sh ${BRANCH_LABEL} ${COMMIT_HASH} \
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&& rm /inject_build_info.sh
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ENTRYPOINT ["/var/scitran/uwsgi-entrypoint.sh"]
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CMD ["uwsgi", "--ini", "/var/scitran/config/uwsgi-config.ini", "--http", "0.0.0.0:8080", "--http-keepalive", "--so-keepalive", "--add-header", "Connection: Keep-Alive" ]
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FROM python:2.7-alpine3.6 as build
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RUN apk add --no-cache build-base curl
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WORKDIR /src/nginx-unit
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RUN curl -L https://github.com/nginx/unit/archive/master.tar.gz | tar xz --strip-components 1
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RUN ./configure --prefix=/usr/local --modules=lib --state=/var/local/unit --pid=/var/unit.pid --log=/var/log/unit.log \
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&& ./configure python \
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&& make install
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FROM python:2.7-alpine3.6 as dist
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RUN apk add --no-cache git
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COPY --from=build /usr/local/sbin/unitd /usr/local/sbin/unitd
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COPY --from=build /usr/local/lib/python.unit.so /usr/local/lib/python.unit.so
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EXPOSE 80 8080 27017
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VOLUME /data/db
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WORKDIR /scr/core
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COPY . .
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COPY docker/unit.json /var/local/unit/conf.json
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RUN pip install -e .
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CMD ["unitd", "--control", "*:8080", "--no-daemon", "--log", "/dev/stdout"]
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FROM dist as testing
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RUN apk add --no-cache --repository http://dl-cdn.alpinelinux.org/alpine/edge/community mongodb=3.4.4-r0
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RUN pwd
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CMD ["./docker/dev+mongo.sh"]
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#docker run -it --rm -p 8080:80 -p 8081:8080 scitran/core:testing

‎api/app.py

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from .web import start
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application = start.app_factory()

‎docker/dev+mongo.sh

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#!/usr/bin/env sh
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mongod &
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MONGOD_PID=$!
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unitd --control "*:8888" --no-daemon --log /dev/stdout

‎docker/unit.json

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{
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"listeners": {
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"*:80": {
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"application": "scitran-core"
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}
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},
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"applications": {
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"scitran-core": {
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"type": "python",
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"workers": 2,
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"user": "root",
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"group": "root",
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"path": "/src/core",
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"module": "api.app"
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}
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}
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}

‎requirements.txt

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This file was deleted.

‎setup.py

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from setuptools import setup, find_packages
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install_requires = [
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'django >= 1.11.5',
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'elasticsearch==5.3.0',
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'enum34==1.1.6',
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'jsonschema==2.6.0',
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'Markdown==2.6.5',
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'pymongo==3.2',
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'python-dateutil==2.4.2',
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'pytz==2015.7',
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'requests==2.9.1',
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'rfc3987==1.3.4',
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'strict-rfc3339==0.7',
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'unicodecsv==0.9.0',
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'webapp2==2.5.2',
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'WebOb==1.5.1',
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'gears',
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]
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dependency_links = [
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'git+https://github.com/flywheel-io/[email protected]#egg=gears',
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]
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setup(
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name = 'example',
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version = '0.0.1',
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description = '',
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author = '',
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author_email = '',
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url = '',
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license = '',
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packages = find_packages(),
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dependency_links = dependency_links,
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install_requires = install_requires,
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)

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