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@EdinburghGenomics

Edinburgh Genomics

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  1. Analysis-Driver Analysis-Driver Public

    Pipelines for Illumina HiSeqX demultiplexing, sequence QC and variant calling.

    Python 8

  2. Reporting-App Reporting-App Public

    A Flask web app for presenting bcl2fastq and variant calling performance reports from Analysis-Driver

    Python 4 1

  3. EGCG-Project-Management EGCG-Project-Management Public

    Tools for managing the data generated by EdinburghGenomics/Analysis-Driver, including review, delivery and deletion.

    Python 1

  4. clarity_scripts clarity_scripts Public

    API and EPP scripts

    Python 1

  5. EGCG-Core EGCG-Core Public

    Shared functionality across EGCG projects

    Python 2

  6. pyclarity-lims pyclarity-lims Public

    Forked from SciLifeLab/genologics

    Python interface to the GenoLogics LIMS server via its REST API.

    Python 11 5

Repositories

Showing 10 of 32 repositories
  • hesiod Public

    Reports on your Promethion (or other NanoPore) data.

    EdinburghGenomics/hesiod’s past year of commit activity
    Python 2 0 2 0 Updated Apr 23, 2025
  • smrtino Public

    Run pipeline for PacBio Sequel SMRT cells

    EdinburghGenomics/smrtino’s past year of commit activity
    Python 1 0 2 0 Updated Apr 23, 2025
  • illuminatus Public

    The all-knowing, all-seeing, enlightened pipeline for Illumina run processing.

    EdinburghGenomics/illuminatus’s past year of commit activity
    Python 3 1 0 0 Updated Apr 23, 2025
  • snakemake Public Forked from snakemake/snakemake

    Fork of Snakemake for adding patches and fixes for EdGe

    EdinburghGenomics/snakemake’s past year of commit activity
    HTML 0 MIT 593 0 0 Updated Apr 8, 2025
  • snakemake-interface-executor-plugins Public Forked from snakemake/snakemake-interface-executor-plugins

    This package provides a stable interface for interactions between Snakemake and its executor plugins.

    EdinburghGenomics/snakemake-interface-executor-plugins’s past year of commit activity
    Python 0 MIT 13 0 0 Updated Apr 8, 2025
  • snakemake-executor-plugin-cluster-generic Public Forked from snakemake/snakemake-executor-plugin-cluster-generic

    Generic cluster executor for Snakemake

    EdinburghGenomics/snakemake-executor-plugin-cluster-generic’s past year of commit activity
    Python 0 MIT 7 0 0 Updated Apr 8, 2025
  • Analysis-Driver Public

    Pipelines for Illumina HiSeqX demultiplexing, sequence QC and variant calling.

    EdinburghGenomics/Analysis-Driver’s past year of commit activity
    Python 8 0 12 1 Updated Dec 10, 2024
  • bashmocker Public

    A Python helper for unit testing shell scripts.

    EdinburghGenomics/bashmocker’s past year of commit activity
    Python 0 0 0 0 Updated Dec 4, 2024
  • NERC_EcologicalGenomics Public

    Bioinformatics Workflow for NERC Ecological Genomics training 2023

    EdinburghGenomics/NERC_EcologicalGenomics’s past year of commit activity
    0 0 0 0 Updated Sep 10, 2024
  • transfer_test_maker Public

    Helps to make pathological test cases for FTP downloads

    EdinburghGenomics/transfer_test_maker’s past year of commit activity
    Python 0 0 0 0 Updated Oct 16, 2023
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