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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 26 13

Repositories

Showing 10 of 278 repositories
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Apr 22, 2025
  • nextflow-modules Public

    Nextflow modules for use with nf-core tooling

    JaneliaSciComp/nextflow-modules’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Apr 22, 2025
  • RubinFlyDiscoSettings Public

    Rubin Lab settings folder for FlyDiscoAnalysis

    JaneliaSciComp/RubinFlyDiscoSettings’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 22, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 1 BSD-3-Clause 1 14 1 Updated Apr 22, 2025
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 3 Updated Apr 22, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 0 0 Updated Apr 22, 2025
  • fileglancer-central Public

    Central metadata server for Fileglancer deployments

    JaneliaSciComp/fileglancer-central’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Apr 22, 2025
  • tensorswitch Public

    This package provides a unified entry point and organized task modules for managing N5/Zarr dataset conversions and downsampling. It centralizes your workflow into a single pipeline to reduce manual work and errors.

    JaneliaSciComp/tensorswitch’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Apr 21, 2025
  • flycore-utilities Public

    Utility programs for synchronization with the Fly Facility's FLYF2 database

    JaneliaSciComp/flycore-utilities’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Apr 21, 2025
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 23 BSD-3-Clause 3 6 1 Updated Apr 21, 2025
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