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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 242 84

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 222 106

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 211 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 321 repositories
  • sda-uppmax-integration Public
    NBISweden/sda-uppmax-integration’s past year of commit activity
    Go 0 0 0 1 Updated Apr 21, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 45 2 Updated Apr 21, 2025
  • workshop-data-visualization-r Public

    Materials for NBIS workshop on data visulalization

    NBISweden/workshop-data-visualization-r’s past year of commit activity
    HTML 2 GPL-3.0 3 1 0 Updated Apr 17, 2025
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 59 7 Updated Apr 17, 2025
  • PLP_Design_Portal Public

    This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

    NBISweden/PLP_Design_Portal’s past year of commit activity
    0 0 11 1 Updated Apr 17, 2025
  • vector-oligo-search Public
    NBISweden/vector-oligo-search’s past year of commit activity
    Python 0 GPL-3.0 1 1 2 Updated Apr 17, 2025
  • sdafs Public

    FUSE file system driver for the sensitive data archive

    NBISweden/sdafs’s past year of commit activity
    Go 0 MIT 0 0 5 Updated Apr 16, 2025
  • SystemsThinking Public

    Systems thinking about planetary boundaries, energy, biodiversity and topics related to life sciences

    NBISweden/SystemsThinking’s past year of commit activity
    CSS 0 GPL-3.0 0 0 1 Updated Apr 16, 2025
  • Training-Tech-shorts Public

    Short lessons, training various technologies useful to our work.

    NBISweden/Training-Tech-shorts’s past year of commit activity
    HTML 5 12 17 1 Updated Apr 16, 2025
  • swefreq Public

    Swedish Frequency resource for genomics website

    NBISweden/swefreq’s past year of commit activity
    Python 7 GPL-3.0 1 0 10 Updated Apr 15, 2025
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