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JugLab

GitHub for the JugLab

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  1. n2v n2v Public

    This is the implementation of Noise2Void training.

    Python 440 115

  2. EmbedSeg EmbedSeg Public

    Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

    Python 114 23

  3. FourierImageTransformer FourierImageTransformer Public

    Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.

    Python 97 13

  4. pn2v pn2v Public

    This is our implementation of Probabilistic Noise2Void

    Python 76 11

  5. DenoiSeg DenoiSeg Public

    Joint training of denoising and segmentation.

    Jupyter Notebook 71 21

  6. PPN2V PPN2V Public

    Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"

    Python 56 9

Repositories

Showing 10 of 91 repositories
  • featureforest Public

    A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier

    juglab/featureforest’s past year of commit activity
    Python 16 BSD-3-Clause 2 5 3 Updated Apr 21, 2025
  • DivNoising Public

    DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains the code to reproduce the results reported in the paper https://openreview.net/pdf?id=agHLCOBM5jP

    juglab/DivNoising’s past year of commit activity
    Python 43 7 0 0 Updated Apr 16, 2025
  • cellpose-bmz-wrapper Public

    A wrapper to pack cellpose model for bioimage model zoo

    juglab/cellpose-bmz-wrapper’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Apr 9, 2025
  • MycroVerse Public

    Cell Simulator to map parametrical distributions into various modalities

    juglab/MycroVerse’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 0 1 Updated Apr 1, 2025
  • denoiSplit Public
    juglab/denoiSplit’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 1 0 0 Updated Mar 4, 2025
  • uSplit Public
    juglab/uSplit’s past year of commit activity
    Python 7 MIT 5 3 1 Updated Feb 27, 2025
  • MicroSplit Public Forked from ashesh-0/Disentangle

    Experiments for MicroSplit were done using this code.

    juglab/MicroSplit’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Feb 5, 2025
  • n2v Public

    This is the implementation of Noise2Void training.

    juglab/n2v’s past year of commit activity
    Python 440 115 24 (1 issue needs help) 3 Updated Dec 18, 2024
  • labkit-ui Public

    Advanced Tool for Labeling And Segmentation

    juglab/labkit-ui’s past year of commit activity
    Java 36 BSD-2-Clause 22 59 3 Updated Oct 21, 2024
  • MicroSSIM Public

    Range Invariant SSIM

    juglab/MicroSSIM’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 1 0 Updated Sep 21, 2024
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