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22 Open 865 Closed
22 Open 865 Closed
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Issues list

/etc/profile.d/sra-tools.csh broken
#1011 opened Feb 14, 2025 by outpaddling
docs on setting up vdb-config in an automated setting
#998 opened Dec 19, 2024 by nick-youngblut
2
Dump fastq to sra-lite
#995 opened Dec 12, 2024 by ledwmp
3
Feature suggestion: option in fasterq-dump to output the FASTQ files already gzipped
#956 opened Aug 14, 2024 by fantauzzi
vdb-config: use AWS IAM role instead of credentials file
#945 opened Jul 4, 2024 by peter-sandor-1992
1
vdb-config
#936 opened May 8, 2024 by anjilsri
4
consider adding a flake.nix
#854 opened Sep 30, 2023 by MatrixManAtYrService
default parameter values tinhelp output for fasterq-dump
#840 opened Aug 17, 2023 by bwlang
1
Feature request: increase speed of C++ API for streaming reads from alignment-based SRA records
#794 opened Mar 21, 2023 by jgans
fasterq-dump "--only-aligned" and "--only-unaligned" ignored when combined with "--fasta"
#793 opened Mar 21, 2023 by jgans
fasterq-dump.3.0.0 err: index.c get_nearest_offset() -> too many rounds
#732 opened Nov 6, 2022 by mpuzio
2
prefetch errors out if number of files is greater than 516
#722 opened Oct 3, 2022 by angadkalra
Fetch Max and Min read length from fastq
#571 opened Jan 6, 2022 by xexpanderx
2
documentation difficult for the colorblind
#563 opened Dec 15, 2021 by dpschreiner
@wraetz
3
Writing fasterq-dump output as a streamable not currently possible
#508 opened May 16, 2021 by wwood
3
sra-stat is incredibly slow for certain files
#188 opened Mar 22, 2019 by Miserlou
Issue to collect native SRA format tools
#173 opened Jan 18, 2019 by seandavi
2
fasterq-dump and snakemake
#172 opened Jan 18, 2019 by Hoohm
5
Sra-pileup region list issues
#86 opened Jun 19, 2017 by SichongP
sam-dump does not add .SPOT_GROUP to QNAME for unaligned reads
#49 opened Dec 21, 2016 by buddej
support proxy authentication
#28 opened Mar 4, 2016 by tolot27
21
vdb-dump for complete genomics reads is extremely slow
#26 opened Feb 12, 2016 by lilit-nersisyan
36
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