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    129 repositories

    • va-spec

      Public
      An information model for representing variant annotations.
      Jupyter Notebook
      •
      Apache License 2.0
      •6•18•116•2•Updated Apr 28, 2025Apr 28, 2025

    • quality-control-wgs

      Public
      Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
      Jupyter Notebook
      •
      Apache License 2.0
      •4•14•11•6•Updated Apr 25, 2025Apr 25, 2025

    • vrs-python

      Public
      GA4GH Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •32•55•53•4•Updated Apr 24, 2025Apr 24, 2025

    • cat-vrs

      Public
      A terminology and data model for describing categorical variation concepts.
      Makefile
      •
      Apache License 2.0
      •3•4•20•0•Updated Apr 24, 2025Apr 24, 2025

    • Get-Started-with-GA4GH-APIs

      Public
      ISMB 2022 tutorial on FASP and Starter Kit
      Jupyter Notebook
      •
      Apache License 2.0
      •2•6•5•1•Updated Apr 24, 2025Apr 24, 2025

    • va-spec-python

      Public
      GA4GH Variation Annotation Python Implementation
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •2•1•2•1•Updated Apr 22, 2025Apr 22, 2025

    • ga4gh-starter-kit-common

      Public
      Common utils library for GA4GH Starter Kit web services
      starter-kit
      Java
      •
      Apache License 2.0
      •2•1•6•2•Updated Apr 16, 2025Apr 16, 2025

    • htsget-compliance

      Public
      Compliance testing for htsget deployments
      Python
      •
      Apache License 2.0
      •3•1•2•0•Updated Apr 14, 2025Apr 14, 2025

    • schema-registry

      Public
      Specification for schema registry API
      schema-registry
      Apache License 2.0
      •0•0•8•0•Updated Apr 8, 2025Apr 8, 2025

    • vrs

      Public
      Extensible specification for representing and uniquely identifying biological sequence variation
      bioinformaticsgenomicsvariation
      Jupyter Notebook
      •
      Apache License 2.0
      •36•88•25•0•Updated Apr 3, 2025Apr 3, 2025

    • cat-vrs-python

      Public
      GA4GH Categorical Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •3•1•1•0•Updated Apr 3, 2025Apr 3, 2025

    • connect-2025-hackathon

      Public
      April Connect 2025 hackathon session
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • fasp-scripts

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •6•12•9•0•Updated Apr 2, 2025Apr 2, 2025

    • large-scale-genomics-wiki

      Public
      Homepage for the Large Scale Genomics Work Stream
      3•8•1•0•Updated Mar 31, 2025Mar 31, 2025

    • gks-portal

      Public
      MIT License
      •1•0•15•0•Updated Mar 28, 2025Mar 28, 2025

    • refget

      Public
      GA4GH Refget specifications docs
      collectiondigestfastasequence
      9•16•20•1•Updated Mar 28, 2025Mar 28, 2025

    • data-repository-service-schemas

      Public
      A repository for the schemas used for the Data Repository Service.
      Apache License 2.0
      •53•61•65•21•Updated Mar 24, 2025Mar 24, 2025

    • gks-core

      Public
      Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
      Python
      •
      Apache License 2.0
      •0•2•5•0•Updated Mar 20, 2025Mar 20, 2025

    • gks2clinvar

      Public
      A submission tool for submitting to the ClinVar Submission API using GA4GH GKS data
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • gks-metaschema

      Public
      Tools and scripts for parsing the GKS standards metaschemas
      Python
      •
      Apache License 2.0
      •3•0•8•0•Updated Mar 13, 2025Mar 13, 2025

    • gk-pilot

      Public
      A pilot implementation of GKS Work Stream specifications.
      Makefile
      •
      Apache License 2.0
      •2•1•11•2•Updated Mar 6, 2025Mar 6, 2025

    • task-execution-schemas

      Public
      Apache License 2.0
      •29•83•40•7•Updated Mar 5, 2025Mar 5, 2025

    • w3id.org

      Public
      Forwarding links and rewrite rules for w3id.org
      HTML
      •1.3k•3•0•0•Updated Feb 25, 2025Feb 25, 2025

    • approval-tracker

      Public
      GitHub repository for tracking the progress of specification approval
      0•2•11•0•Updated Feb 22, 2025Feb 22, 2025

    • ga4gh-starter-kit-drs

      Public
      Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification
      starter-kit
      Java
      •
      Apache License 2.0
      •9•4•9•1•Updated Dec 17, 2024Dec 17, 2024

    • ga4gh-testbed-api

      Public
      GA4GH-wide testbed infrastructure for hosting testbed reports
      Java
      •1•1•8•0•Updated Dec 17, 2024Dec 17, 2024

    • TASC

      Public
      TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
      interoperabilityharmonisationtechnical-alignment
      8•9•16•3•Updated Dec 5, 2024Dec 5, 2024

    • fasp-clients

      Public
      a place for client code from the FASP effort
      Python
      •
      Apache License 2.0
      •4•2•6•0•Updated Nov 29, 2024Nov 29, 2024

    • tool-registry-service-schemas

      Public
      APIs for discovering genomics tools, their metadata and their containers
      apitoolworkflowwdlga4ghcwl
      Shell
      •
      Apache License 2.0
      •18•31•25•1•Updated Oct 29, 2024Oct 29, 2024

    • data-security

      Public
      This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
      Python
      •15•23•8•5•Updated Oct 28, 2024Oct 28, 2024