Fred Hutch Data Science Lab WILDS

All

32 repositories

getwilds.github.io
Public
WILDS Website
Lua
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Creative Commons Zero v1.0 Universal
•0•0•5•0•Updated May 6, 2025May 6, 2025
registry
Public
WILDS Repo Registry
Python
•0•0•1•0•Updated May 6, 2025May 6, 2025
dasl-quarto
Public
Quarto template for FHCC DaSL HTML report
HTML
•0•0•0•1•Updated May 6, 2025May 6, 2025
wilds-docker-library
Public
Collection of Docker images for use in WILDS bioinformatics workflows
containers wilds-docker
Dockerfile
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MIT License
•3•2•14•4•Updated May 2, 2025May 2, 2025
ww-star-deseq2
Public
Relatively straightforward WDL workflow that executes STAR+DESeq2 on RNAseq data
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•1•1•Updated May 2, 2025May 2, 2025
ww-saturation
Public
Self-contained WDL workflow that performs saturation mutagenesis analysis
WDL
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MIT License
•2•0•0•0•Updated Apr 14, 2025Apr 14, 2025
sixtyfour
Public
🚚 AWS for Data Scientists
aws r aws-billing rstats r-pkg wilds-r
R
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Other
•2•17•28•2•Updated Apr 10, 2025Apr 10, 2025
rules
Public
WILDS Rules
Python
•0•0•0•0•Updated Mar 22, 2025Mar 22, 2025
guide
Public
WILDS Dev Guide
documentation
Lua
•
Creative Commons Zero v1.0 Universal
•1•3•9•1•Updated Mar 11, 2025Mar 11, 2025
.github
Public
0•0•1•0•Updated Mar 3, 2025Mar 3, 2025
ww-salmon
Public
Self-contained WDL workflow that uses the Salmon RNA-seq computational tool.
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Mar 1, 2025Mar 1, 2025
rls
Public
Row Level Security Functions for PostgreSQL and Redshift
postgresql rstats redshift row-level-security wilds-r
R
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Other
•0•2•6•2•Updated Feb 4, 2025Feb 4, 2025
makefiles
Public
Makefile templates for WILDS projects
utilities
Makefile
•0•0•1•0•Updated Feb 3, 2025Feb 3, 2025
oncarto
Public
🗺 A Map Room
R
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Other
•0•2•4•0•Updated Jan 17, 2025Jan 17, 2025
ww-shapemapper
Public
Self-contained WDL workflow that uses Shapemapper
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jan 9, 2025Jan 9, 2025
proof
Public
MIT License
•0•0•22•0•Updated Dec 30, 2024Dec 30, 2024
ww-demo-workflows
Public
A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.
wdl-workflow wilds-wdl
WDL
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MIT License
•1•1•0•1•Updated Dec 16, 2024Dec 16, 2024
ww-sourmash
Public
Self-contained WDL workflow that uses Sourmash to perform similarity searches between sequence files.
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Dec 12, 2024Dec 12, 2024
proofr
Public
Client for the PROOF API
r-package wilds-r
R
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Other
•8•1•1•0•Updated Dec 3, 2024Dec 3, 2024
personas
Public
CSS
•
Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Oct 7, 2024Oct 7, 2024
badges
Public
WILDS Badges
utilities
HTML
•0•0•1•0•Updated Sep 25, 2024Sep 25, 2024
cancerprof
Public
API Client for State Cancer Profiles
wilds-r
R
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Other
•3•2•17•1•Updated Sep 25, 2024Sep 25, 2024
rcromwell
Public
R client for interacting with Cromwell with WDL workflows
workflow r workflow-engine rstats r-package workflow-management wilds-r
R
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Other
•2•4•8•0•Updated Sep 17, 2024Sep 17, 2024
ww-sra-star
Public
Workflow to download paired fastqs from SRA and pass through STAR 2 pass
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jul 9, 2024Jul 9, 2024
ww-cell-ranger
Public
A basic starting point for a cell ranger workflow
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jul 8, 2024Jul 8, 2024
ww-fastq-to-cram
Public
Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jul 8, 2024Jul 8, 2024
ww-vc-trio
Public
Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
wdl-workflow wilds-wdl
WDL
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MIT License
•2•0•0•0•Updated Jul 8, 2024Jul 8, 2024
wdl-101
Public
This is the repository for the WDL and JSON files accompanying the WDL 101 course.
training wdl-workflow
WDL
•0•0•0•1•Updated Apr 10, 2024Apr 10, 2024
shiny-cromwell
Public
Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Amy Paguirigan
shiny-apps wilds-r
R
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MIT License
•3•0•1•0•Updated Mar 27, 2024Mar 27, 2024
bs
Public
Bootstrap Components for DASL Projects
utilities wilds-r
R
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Other
•0•0•0•0•Updated Feb 8, 2024Feb 8, 2024