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    81 repositories

    • ot-ui-apps

      Public
      Open Targets Platform web applications
      javascriptgraphqlreactjswebappembl-ebivitejsturborepoeuropean-bioinformatics-institute
      JavaScript
      •
      Apache License 2.0
      •12•5•0•9•Updated May 10, 2025May 10, 2025

    • json_schema

      Public
      Open Targets target-disease association schema
      Python
      •
      Apache License 2.0
      •10•11•0•1•Updated May 9, 2025May 9, 2025

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •5•12•0•0•Updated May 9, 2025May 9, 2025

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      pythonopen-sourcegwasgeneticspysparkdrug-discovery
      Jupyter Notebook
      •
      Apache License 2.0
      •10•37•0•11•Updated May 9, 2025May 9, 2025

    • platform-output-support

      Public
      POS is an automatic and unified place to perform a release of OT Platform to the public
      Shell
      •
      Apache License 2.0
      •3•1•0•2•Updated May 8, 2025May 8, 2025

    • orchestration

      Public
      Open Targets pipeline orchestration layer
      Python
      •
      Apache License 2.0
      •1•2•0•5•Updated May 8, 2025May 8, 2025

    • opentargets.github.io

      Public
      Open Targets corporate website code using Jekyll
      jekyll
      HTML
      •
      Apache License 2.0
      •3•8•0•1•Updated May 8, 2025May 8, 2025

    • platform-etl-backend

      Public
      Scala
      •
      Apache License 2.0
      •8•9•2•1•Updated May 7, 2025May 7, 2025

    • Gentropy-manuscript

      Public
      Repository to host code supporting the analysis for the `Systematic and scalable analysis of common variation advances drug target discovery`
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•1•Updated May 7, 2025May 7, 2025

    • platform-docs

      Public
      https://platform-docs.opentargets.org/
      1•1•0•1•Updated May 7, 2025May 7, 2025

    • ot-release-metrics

      Public
      Collection and visualisation of Open Targets Platform release metrics.
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated May 6, 2025May 6, 2025

    • gentroutils

      Public
      Utility CLI tools for gentropy orchestration
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 5, 2025May 5, 2025

    • otter

      Public
      Open Targets' Task ExecutoR
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • pts

      Public
      Open Targets Pipeline Transformation Stage
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • pis

      Public
      Open Targets Pipeline Input Stage
      Python
      •
      Apache License 2.0
      •5•5•0•0•Updated May 1, 2025May 1, 2025

    • terraform-google-opentargets-platform

      Public
      Terraform module for Open Targets Platform infrastructure definition
      HCL
      •
      Apache License 2.0
      •2•1•0•0•Updated Apr 29, 2025Apr 29, 2025

    • ot-literature

      Public
      The improved Open Targets Literature Pipeline
      Python
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • ot_croissant

      Public
      Exploratory version for OT croissant
      Jupyter Notebook
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • evidence_datasource_parsers

      Public
      script to convert phewascatalog database to JSONs, with ENSGIDs and EFO ids.
      Python
      •
      Apache License 2.0
      •3•8•0•3•Updated Apr 24, 2025Apr 24, 2025

    • seqqurat

      Public
      Duckdb interface for open targets outputs
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • p2j

      Public
      Parquet to JSON lines converter
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • notebooks

      Public
      Example notebooks to illustrate how to use the Open Targets ecosystem
      Apache License 2.0
      •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • issues

      Public
      Issue tracker for Open Targets Platform and Open Targets Genetics Portal
      tracker
      Apache License 2.0
      •2•12•259•0•Updated Mar 24, 2025Mar 24, 2025

    • google-batch-monitor

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • standalone-deployment-platform

      Public
      Standalone Deployment for Open Targets Platform
      Shell
      •
      Apache License 2.0
      •1•5•0•0•Updated Mar 17, 2025Mar 17, 2025

    • ontoform

      Public archive
      Transforms ontologies and other input data into the format used by the Open Targets pipeline
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Mar 15, 2025Mar 15, 2025

    • uniprot-evidence-parser

      Public
      Pipeline to generate disease/target evidence from Uniprot data
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • curation

      Public
      mappings used by the open targets platform to integrate data sources
      Python
      •
      Apache License 2.0
      •1•4•0•0•Updated Feb 5, 2025Feb 5, 2025

    • timeseries

      Public
      Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.
      timeseriespysparkopentargets
      Jupyter Notebook
      •0•2•0•0•Updated Dec 12, 2024Dec 12, 2024

    • ot-snapshot

      Public
      Snapshots for all the components used to generate a release of the Open Targets Platform
      0•0•0•0•Updated Dec 11, 2024Dec 11, 2024