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    24 repositories

    • qp-knight-lab-processing

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•25•1•Updated May 6, 2025May 6, 2025

    • mg-scripts

      Public archive
      Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•0•0•Updated Apr 22, 2025Apr 22, 2025

    • qiita

      Public
      Qiita - A multi-omics databasing effort
      pythonmicrobiomemicrobiome-analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •81•124•140•2•Updated Apr 10, 2025Apr 10, 2025

    • qp-woltka

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•1•Updated Mar 31, 2025Mar 31, 2025

    • qtp-job-output-folder

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • qtp-diversity

      Public
      Qiita Type Plugin for diversity types
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • qp-deblur

      Public
      Python
      •7•2•5•0•Updated Mar 6, 2025Mar 6, 2025

    • qtp-visualization

      Public
      Qiita type plugin for visualization artifacts
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•1•1•Updated Mar 6, 2025Mar 6, 2025

    • qp-spades

      Public
      Qiita plugin to process metagenomic assemblies and isolates
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • qtp-sequencing

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•1•2•0•Updated Jan 31, 2025Jan 31, 2025

    • qp-meta

      Public
      Qiita Woltka processing plugin with fast bowtie2 implemenetation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • qiita_client

      Public
      A python library that simplifies the communication between the plugins and Qiita's REST api
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•2•0•1•Updated Sep 5, 2024Sep 5, 2024

    • qtp-biom

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•1•0•1•Updated Aug 12, 2024Aug 12, 2024

    • qiita-files

      Public
      File formats defined for Qiita and Qiita plugins internal use
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•1•1•Updated Mar 22, 2024Mar 22, 2024

    • qp-fastp-minimap2

      Public
      Fast QC and host filtering for Whole Genome Sequencing and Metatranscriptomic sequencing
      Python
      •
      BSD 2-Clause "Simplified" License
      •5•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • qp-qiime2

      Public
      Qiime 2 plugin for Qiita
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•3•4•1•Updated Oct 29, 2023Oct 29, 2023

    • qp-target-gene

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • microsetta-interface

      Public
      The Microsetta participant facing user interface
      Jinja
      •
      BSD 3-Clause "New" or "Revised" License
      •17•0•0•0•Updated Jul 4, 2022Jul 4, 2022

    • microsetta-private-api

      Public
      A private microservice to support The Microsetta Initiative
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•0•0•0•Updated Jun 29, 2022Jun 29, 2022

    • microsetta-admin

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•0•0•Updated May 11, 2022May 11, 2022

    • qp-shogun

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•3•0•Updated Aug 7, 2020Aug 7, 2020

    • qtp-mass-spec

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•1•Updated Apr 26, 2018Apr 26, 2018

    • qp-template-cookiecutter

      Public
      Cookiecutter template for Qiita plugins
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Feb 9, 2018Feb 9, 2018

    • qtp-template-cookiecutter

      Public
      Cookiecutter template for Qiita Type plugins
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 27, 2017Oct 27, 2017