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    137 repositories

    • ds-package-creator

      Public
      Split a R package into a "client" and "server" version , datashield ready.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • EPD

      Public
      The Eukaryotic Promoter Database (EPD) website
      promoterstranscription-start-siteeukaryoticeukaryotic-transcription-signal
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • termal

      Public
      Pep8
      •
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • FIDELIS-landscape-survey-analysis

      Public
      HTML
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • intro-bayesian-statistics-training

      Public
      SIB course on bayesian statistics with applications using Rstan
      trainingrstatisticstraining-materialsbayesian-statistics
      HTML
      •
      Creative Commons Attribution 4.0 International
      •11•33•0•0•Updated May 6, 2025May 6, 2025

    • single-cell-python-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•3•0•0•Updated May 4, 2025May 4, 2025

    • spatial-transcriptomics-training

      Public
      R
      •
      Creative Commons Attribution 4.0 International
      •1•2•1•0•Updated May 4, 2025May 4, 2025

    • glittr-stats

      Public
      General statistics of Glittr.org. Comes with the manuscript.
      PostScript
      •0•2•0•0•Updated May 4, 2025May 4, 2025

    • cancer-variants-training

      Public
      Lua
      •
      Creative Commons Attribution 4.0 International
      •2•5•0•0•Updated May 4, 2025May 4, 2025

    • kgsteward

      Public
      Knowledge Graph Steward - Command line tool to help manage RDF store
      Python
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated May 2, 2025May 2, 2025

    • sparql-llm

      Public
      🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries
      sparqlsparql-query-builderexpasyllm
      Jupyter Notebook
      •
      MIT License
      •5•35•2•0•Updated May 2, 2025May 2, 2025

    • training-cookbook

      Public
      Other
      •0•0•0•0•Updated May 2, 2025May 2, 2025

    • containers-snakemake-training

      Public
      Course website "Introduction to Containers and Snakemake for Reproducible Research"
      Dockerfile
      •
      Creative Commons Attribution 4.0 International
      •14•5•0•0•Updated May 1, 2025May 1, 2025

    • sparql-editor

      Public
      💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.
      sparqlsparql-querysparql-query-buildersparql-editoryasgui
      TypeScript
      •
      MIT License
      •3•14•14•0•Updated Apr 30, 2025Apr 30, 2025

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •986•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • sequencing-data-analysis-training

      Public
      SIB course that introduces analysis of NGS data
      trainingtutorialcourseteachingngs-analysis
      Shell
      •
      Creative Commons Attribution 4.0 International
      •14•16•4•0•Updated Apr 25, 2025Apr 25, 2025

    • snp_detect

      Public archive
      Scans a multiple alignment composed of genomic, mRNA, and EST sequences that are believed to originate from the same gene for the presence of sequence variations
      Fortran
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • prosite_scan

      Public archive
      PERL scripts for PROSITE searching and related stuff
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • PrfLib

      Public archive
      Collection of experimental programs supporting the new profile format and search method of PROSITE and NUCSITE
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • BTLib

      Public archive
      Biology Toolkit Library Perl module: This Perl module provides objects useful for parsing and extracting information from DNA, protein, and other type of textual data found in biology sequence analysis and bioinformatics. It also provides scripts to index and retrieve records from databases in flat files.
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • NGS-introduction-training

      Public
      SIB course that introduces analysis of NGS data
      Shell
      •
      Creative Commons Attribution 4.0 International
      •14•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • sparql-examples

      Public
      A set of SPARQL examples that are used in different SIB resources
      HTML
      •
      Other
      •20•15•6•3•Updated Apr 15, 2025Apr 15, 2025

    • course-report

      Public
      R
      •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • training-collection

      Public
      Collection of bioinformatics training materials
      Python
      •
      Other
      •183•1k•1•0•Updated Apr 13, 2025Apr 13, 2025

    • ESTScan

      Public archive
      ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts.
      Perl
      •
      Other
      •0•0•0•0•Updated Apr 11, 2025Apr 11, 2025

    • pyrheadb

      Public
      Repository for the Python package intended to facilitate access to Rhea data from Python
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 8, 2025Apr 8, 2025

    • unix-first-steps-training

      Public
      SIB First Steps with UNIX course
      3•6•0•0•Updated Apr 7, 2025Apr 7, 2025

    • CAS-UNIL-intro-to-unix

      Public
      Introduction to Linux / UNIX and the Bash shell - UNIL CAS in data stewardship
      linuxbashunix
      0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • sparql-examples-utils

      Public
      A tool to maintain and test your SPARQL examples
      qualitysparqlrdf
      Java
      •
      Other
      •20•5•13•2•Updated Apr 5, 2025Apr 5, 2025

    • boxshade

      Public archive
      Boxshade is a program for creating good looking printouts from multiple- aligned protein or DNA sequences
      C
      •0•0•0•0•Updated Apr 4, 2025Apr 4, 2025