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1,105 Open 787 Closed
1,105 Open 787 Closed
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Issues list

--use-conda not working with homebrew mamba installation
#3561 opened May 5, 2025 by clescoat
Difference when quoting [""] with :q and shlex.join bug Something isn't working
#3560 opened May 5, 2025 by danpal96
Endless rerun of following jobs with a checkpoint output updated. bug Something isn't working
#3559 opened May 3, 2025 by Hocnonsense
Logging broken yet again bug Something isn't working
#3558 opened May 2, 2025 by lczech
@cademirch
7
adding .snakemake_ignore similar to .git_ignore enhancement New feature or request
#3557 opened May 2, 2025 by MatteoLacki
3
Mermaid-js output flow connections are incorrect bug Something isn't working
#3556 opened May 1, 2025 by eeidsness
Expand/collect from dataframe enhancement New feature or request
#3555 opened Apr 30, 2025 by fgvieira
Grouped job resource overallocation
#3552 opened Apr 26, 2025 by ASLeonard
local wrapper path should be considered relative to the snakefile enhancement New feature or request
#3548 opened Apr 25, 2025 by Hocnonsense
--use-conda unpredictable bug Something isn't working
#3544 opened Apr 21, 2025 by pesho-ivanov
1
Documentation error: incorrect varible name in example for lookup() bug Something isn't working
#3541 opened Apr 19, 2025 by banfelder
Is the order of unnamed (positional) input files preserved by {input}?
#3540 opened Apr 18, 2025 by bentyeh
How to minimize the result discrepancy of a task between snakemake and bash when using container?
#3539 opened Apr 17, 2025 by gopalpeddinti
Improved error logging enhancement New feature or request
#3529 opened Apr 14, 2025 by daniel-rdt
@cademirch
2
--stats option in newer snakemake versions
#3523 opened Apr 9, 2025 by fanavarro
5
cannot unpack non-iterable NoneType object from #3365 bug Something isn't working
#3495 opened Mar 31, 2025 by Hocnonsense
Make Snakemake --use-conda pipelines independent of Conda installation enhancement New feature or request
#3490 opened Mar 28, 2025 by KasperThystrup
5
Add ability to use typed outputs enhancement New feature or request
#3482 opened Mar 26, 2025 by johanneskoester
@johanneskoester
3
Add ability to rename/move output files enhancement New feature or request
#3480 opened Mar 26, 2025 by johanneskoester
@johanneskoester
2
Per rule based "apptainer-args"
#3478 opened Mar 25, 2025 by grabear
2
Support Yaml tags and/or json hooks enhancement New feature or request
#3477 opened Mar 25, 2025 by irr-github
Accidental removal of remote files? bug Something isn't working
#3476 opened Mar 25, 2025 by MattMonk
Checkpoint "get" still only resolvable once per aggregate function bug Something isn't working
#3475 opened Mar 25, 2025 by ASLeonard
2
ancient() statements are arbitrarily ignored when using a workflow as a module: bug Something isn't working
#3474 opened Mar 23, 2025 by irm-codebase
@Hocnonsense
15
Workflow-specific profile ignored when used as a model bug Something isn't working
#3470 opened Mar 21, 2025 by mschilli87
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