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851 Open 1,289 Closed
851 Open 1,289 Closed
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Issues list

Long read giraffe crashes when mapping FASTA sequence to CHM13-based d2 HPRC pangenome graph
#4577 opened Apr 23, 2025 by jeizenga
1
Significant drop in mapping statistics with vg/1.64.1 compared to vg/1.52.0
#4576 opened Apr 23, 2025 by rickyota
2
vg paths (and other graph-modifying tools) should convert to mutable formats automatically
#4574 opened Apr 22, 2025 by adamnovak
1
Release vg v1.66.0
#4573 opened Apr 21, 2025 by adamnovak
27 tasks
v1.66.0
terminate called after throwing an instance of 'std::runtime_error' what(): Found unexpected delimiter C in fastq/fasta input
#4572 opened Apr 21, 2025 by goodcqzz
4
VG Giraffe long-read: error[vg::get_alignment_emitter]: No graph available supporting translation to named-segment space
#4571 opened Apr 20, 2025 by QichenFU
1
vg giraffe failure with paired-end whole genome seqeunce data set
#4570 opened Apr 19, 2025 by mgujral
4
vg autoindex does not work with compressed FASTA files
#4567 opened Apr 13, 2025 by ohell
11
vg autoindex does not create pantranscriptome wth gfa, fasta and gtf
#4566 opened Apr 13, 2025 by ohell
8
vg surjected bam file does not open correctly in igv
#4564 opened Apr 9, 2025 by freshspaceoctopus
6
BAM flags inconsistent when running 'giraffe->BAM' compared to 'giraffe->GAM->surject->BAM'
#4563 opened Apr 8, 2025 by blinard-BIOINFO
1
warning:[GFAParser] Skipping GFA W line: GFA format error: On pass 1: On line 551210: Duplicate path ScTT#0#chr1 exists in graph
#4562 opened Apr 7, 2025 by ChenDepp
9
Hello, I wonder the nested snarl.
#4559 opened Apr 1, 2025 by pioneer-pi
3
vg autoindex generated truncated files for workflow mpmap and rpvg
#4557 opened Mar 31, 2025 by jiaqi54
size_t vg::GSSWAligner::longest_detectable_gap(size_t, size_t) const: Assertion `read_length >= read_pos' failed.
#4556 opened Mar 27, 2025 by Summer0lhl
Add rescue work limits to short-read Giraffe
#4551 opened Mar 20, 2025 by adamnovak
Questions on Graph Construction and Genotyping Using vg
#4546 opened Mar 14, 2025 by HuangYihang1222
2
report error when use vg surject convert gam to bam then use gatk detect variants
#4538 opened Mar 8, 2025 by ChenDepp
8
How can I add an extra sequence to graph?
#4535 opened Mar 3, 2025 by yeeus
1
Unable to set only one haplotype of a diploid to reference-sense in gbwt
#4533 opened Feb 28, 2025 by ASLeonard
2
The size for vg pack and call file of all samples were the same , and all variations were lowad
#4532 opened Feb 27, 2025 by wuxiaopei0509
3
Harden vg file readers and memory-mapping systems against maliciously-crafted files
#4530 opened Feb 26, 2025 by adamnovak
2
Diagnose and fix new wrong MAPQ 60 HiFi reads
#4525 opened Feb 13, 2025 by adamnovak
Extract a single chromosome or a region of the chromosome from GBZ
#4511 opened Jan 28, 2025 by jikhashkya
2
Converting multiple sequence alignments to variation graphs
#4510 opened Jan 28, 2025 by danimelsz
1
ProTip! What’s not been updated in a month: updated:<2025-03-24.