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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 20 21

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    38 45

Repositories

Showing 10 of 455 repositories
  • mycosnp-nf Public

    MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates

    CDCgov/mycosnp-nf’s past year of commit activity
    Nextflow 51 Apache-2.0 38 11 1 Updated Apr 22, 2025
  • dibbs-query-connector Public

    A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN

    CDCgov/dibbs-query-connector’s past year of commit activity
    TypeScript 6 CC0-1.0 4 51 7 Updated Apr 22, 2025
  • CDCgov/NEDSS-Modernization’s past year of commit activity
    Java 20 4 0 8 Updated Apr 22, 2025
  • CDCgov/dibbs-ecr-viewer’s past year of commit activity
    HTML 3 CC0-1.0 1 97 5 Updated Apr 22, 2025
  • cdc-open-viz Public

    CDC OpenViz is a library of React packages for data visualization.

    CDCgov/cdc-open-viz’s past year of commit activity
    TypeScript 43 Apache-2.0 27 0 11 Updated Apr 22, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 72 Apache-2.0 28 14 1 Updated Apr 21, 2025
  • CDCgov/oamd-bio-test-data’s past year of commit activity
    0 Apache-2.0 0 0 1 Updated Apr 22, 2025
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 79 CC0-1.0 45 1,214 156 Updated Apr 22, 2025
  • cfa-uw-modeling Public

    Modeling of M. genitalium and Chlamydia trachomatis, CFA-UW Collaboration

    CDCgov/cfa-uw-modeling’s past year of commit activity
    R 1 Apache-2.0 2 3 0 Updated Apr 21, 2025
  • MIRA-NF Public
    CDCgov/MIRA-NF’s past year of commit activity
    Nextflow 7 MIT 6 1 2 Updated Apr 21, 2025

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