Repositories list

• NEDSS-Modernization

  Public
  Java

  •4•20•0•7•Updated May 1, 2025May 1, 2025

• RecordLinker

  Public
  The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.

  pythonsqlalchemyfastapi

  Python

  •

  Apache License 2.0

  •2•5•34•5•Updated May 1, 2025May 1, 2025

• MIRA-NF

  Public
  quality-controlnextflowgenome-annotation+ 9irmainfluenzagenome-assemblynf-corenextflow-pipelinesars-cov-2rsv+ 2

  Nextflow

  •

  MIT License

  •6•7•0•0•Updated May 1, 2025May 1, 2025

• wastewater-informed-covid-forecasting

  Public
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

  R

  •

  Apache License 2.0

  •13•47•86•1•Updated May 1, 2025May 1, 2025

• cfa-epinow2-pipeline

  Public
  R

  •

  Apache License 2.0

  •7•11•26•6•Updated May 1, 2025May 1, 2025

• NEDSS-NNDSS-Case-Notifications

  Public
  Java

  •

  Apache License 2.0

  •2•0•0•1•Updated May 1, 2025May 1, 2025

• NEDSS-Helm

  Public
  This repository is created for NEDSS Helm charts.

  Smarty

  •

  Apache License 2.0

  •4•2•0•12•Updated May 1, 2025May 1, 2025

• NEDSS-DataReporting

  Public
  Data Near Real Time Reporting micro services for Modernized NBS System

  TSQL

  •

  Apache License 2.0

  •5•2•0•7•Updated May 1, 2025May 1, 2025

• data-exchange-processing-status

  Public
  The Public Health Data Operations (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.

  Kotlin

  •

  Apache License 2.0

  •3•3•0•4•Updated May 1, 2025May 1, 2025

• dibbs-vm

  Public
  Shell

  •

  Creative Commons Zero v1.0 Universal

  •4•0•24•4•Updated May 1, 2025May 1, 2025

• ixa-epi-isolation

  Public
  Rust

  •

  Apache License 2.0

  •2•1•37•7•Updated May 1, 2025May 1, 2025

• dibbs-ecr-refiner

  Public
  Python

  •

  Apache License 2.0

  •0•2•23•3•Updated May 1, 2025May 1, 2025

• dibbs-aws

  Public template
  HCL

  •

  Creative Commons Zero v1.0 Universal

  •2•3•0•1•Updated May 1, 2025May 1, 2025

• dibbs-query-connector

  Public
  A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN

  nextjsfhirpublichealth+ 2fhir-clientdibbs

  TypeScript

  •

  Creative Commons Zero v1.0 Universal

  •4•6•61•4•Updated May 1, 2025May 1, 2025

• irma-core

  Public
  A tool to aid virus sequencing and accelerate IRMA.

  bioinformaticsncird-idcdc-influenza-division

  Rust

  •

  Apache License 2.0

  •0•6•0•0•Updated May 1, 2025May 1, 2025

• NEDSS-DataIngestion

  Public
  Data Ingestion for Modernization of NEDSS Project by Enquizit

  Java

  •

  Apache License 2.0

  •5•6•0•5•Updated May 1, 2025May 1, 2025

• cfa-immunization-uptake-projection

  Public
  Python

  •

  Apache License 2.0

  •3•2•4•1•Updated May 1, 2025May 1, 2025

• dibbs-FHIR-Converter

  Public
  Conversion utility to translate legacy data formats into FHIR

  Liquid

  •

  MIT License

  •190•1•0•1•Updated May 1, 2025May 1, 2025

• covidhub-reports

  Public
  Apache License 2.0

  •2•0•1•0•Updated May 1, 2025May 1, 2025

• tostadas

  Public
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

  pythondockermetadata+ 17bioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing+ 10

  Python

  •

  Apache License 2.0

  •13•27•12•1•Updated May 1, 2025May 1, 2025

• prime-reportstream

  Public
  ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

  fhirpublic-healthcivic-tech+ 1hl7

  Kotlin

  •

  Creative Commons Zero v1.0 Universal

  •45•79•1.3k•126•Updated May 1, 2025May 1, 2025

• DynODE

  Public
  CDC/CFA/Predict/Scenarios ODE Modeling Framework

  Python

  •

  Apache License 2.0

  •2•8•47•2•Updated May 1, 2025May 1, 2025

• prime-simplereport

  Public
  SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

  reactjsterraformgraphql+ 1spring-boot

  Java

  •

  Creative Commons Zero v1.0 Universal

  •65•60•169•19•Updated May 1, 2025May 1, 2025

• cdc-open-viz

  Public
  CDC OpenViz is a library of React packages for data visualization.

  reactvisualizationdata+ 1visualization-library

  TypeScript

  •

  Apache License 2.0

  •27•43•0•9•Updated May 1, 2025May 1, 2025

• data-exchange-upload

  Public
  The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).

  Go

  •

  Apache License 2.0

  •6•9•43•5•Updated May 1, 2025May 1, 2025

• dibbs-ecr-viewer

  Public
  DIBBS eCR Viewer

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1•3•90•6•Updated May 1, 2025May 1, 2025

• cfa-viral-lineage-model

  Public
  Python

  •

  Apache License 2.0

  •2•11•16•2•Updated May 1, 2025May 1, 2025

• cfa_azure

  Public
  pythonazureazure-batch+ 2azure-container-registryazure-blob-storage

  Python

  •

  Apache License 2.0

  •6•9•1•1•Updated May 1, 2025May 1, 2025

• cfa-ring-vax-widget

  Public
  Python

  •

  Apache License 2.0

  •2•1•12•2•Updated May 1, 2025May 1, 2025

• pyrenew-hew

  Public
  Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew

  Python

  •

  Apache License 2.0

  •3•11•74•3•Updated May 1, 2025May 1, 2025